Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00187 ATGGAGAAACCTTGGGGGCGTTTCGTATGTCTTTTCAGCAGTAAATCTCTCAATATTTCTGCTCGACGAGGACTGCTACGTAAGGAGAAGGAAGAAGATTCCGGGAAGAAGATTAAGAAAATAAGATATTGTTCTGGTTCGCTTTGTGGTGGCACGAAGGTGATGCAAAGGCCTGAAACTGGGTCGCCGGAGTTTTGCAAGAAAAGGGCTTTAATGGCTTCATCAAGCAACTCCATTGCTGATTCTTCTAGCTCTACCAGGTCCATCAAGTCTCCTCTTTACAAACATAACAGCTGTGGTGGGTCTCGTCTTTCCACGTCTTCTTCTTCTTCTTCTTTTTCTGCAACTTCTAGCGCCGTCATTAATGGCGGCAGCGGTTCTCTCAGAGCAATTCCTTCCAGAAAATTCTCCGGGTGTTATGAGTGTAAAATGGTGATGGATCCCATTCTTGGATATACGAAAGATCTTTCTTTTAGATCAGGCATTTTTCCTTGTCCGATGTGTGATGAGATTTTCATGAAGTCTGAAAATTTGGAGCTTCATCAGGCTACTAGTCATGCTGTGTCTGAACTAGATCCAGAAGACACAAGCAGAAAGATTGTGGAAATTATATTCAAATCAAGTTGGAGGAAGAAGGAGCCTTCAAGCTGCAAGATAGTGCAAATCCTCAAAGTCCACAACACCCAAAAAACCGTTTCGAAATTCGAAGAATACAGAGACGCCATTAAAGCGAAAGCAACGAAGCTCCACAAGAAACACCCCCGCTGCCTAGCGGACGGAAACGAGATGCTCCGATTCCACTGGACCACCATAGCTTGCTCTCTGGGCGTCAATGGCAGAACCGAACTCTGCCACGCGATTCATCCTCCGTGCAGTATGTGCAGCATCATAAGGGGTGGCTTCAGGGCGGCGGAAAAGGGTATTCTGACGACGGCCACAAGTGGGGCGGCGGATGACAGAGCAGGGGAGGCGGTGGAGGGGAATGAGAAGAGGGCGATGATGGTCTGTAGAGTGGTGGCGGGGAGGGTGAAGAGGAGCGTGGAAGGGGGAATGGAGGAGTATGACTCAGTGAGTGGAGGTGTGGGAGTTTATTCTAAGTGGAACGAGTTGTATGTTTTTAATCCCAAGGCTATATTGCCTTGTTTTGTTGTTGTTTACGAAGGGATTAGTGCTTAA 1176 47.19 MEKPWGRFVCLFSSKSLNISARRGLLRKEKEEDSGKKIKKIRYCSGSLCGGTKVMQRPETGSPEFCKKRALMASSSNSIADSSSSTRSIKSPLYKHNSCGGSRLSTSSSSSSFSATSSAVINGGSGSLRAIPSRKFSGCYECKMVMDPILGYTKDLSFRSGIFPCPMCDEIFMKSENLELHQATSHAVSELDPEDTSRKIVEIIFKSSWRKKEPSSCKIVQILKVHNTQKTVSKFEEYRDAIKAKATKLHKKHPRCLADGNEMLRFHWTTIACSLGVNGRTELCHAIHPPCSMCSIIRGGFRAAEKGILTTATSGAADDRAGEAVEGNEKRAMMVCRVVAGRVKRSVEGGMEEYDSVSGGVGVYSKWNELYVFNPKAILPCFVVVYEGISA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1909693 1911163 - BLOR16008 Blo17g00187 72575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00187 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 191 IPR013087 -
Blo17g00187 391 ProSitePatterns Zinc finger C2H2 type domain signature. 165 186 IPR013087 -
Blo17g00187 391 MobiDBLite consensus disorder prediction 94 113 - -
Blo17g00187 391 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 387 - -
Blo17g00187 391 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 387 - -
Blo17g00187 391 Gene3D - 186 388 - -
Blo17g00187 391 SUPERFAMILY ADP-ribosylation 188 389 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g00683 Blo17g00187 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01167 Blo-Chr3:38026367 Blo17g00187 Blo-Chr17:1909693 1.58E-65 dispersed
Blo11g00062 Blo-Chr11:482278 Blo17g00187 Blo-Chr17:1909693 5.96E-126 dispersed
Blo12g00885 Blo-Chr12:27044154 Blo17g00187 Blo-Chr17:1909693 6.14E-83 dispersed
Blo17g00187 Blo-Chr17:1909693 Blo19g00233 Blo-Chr19:11583379 2.06E-32 dispersed
Blo17g00187 Blo-Chr17:1909693 Blo12g00683 Blo-Chr12:25082669 1.01E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13495 None None None None Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00187 - - qlo:115960248 443.736