Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00098 ATGAGAGATGTACCTCGCTCGATTCAACGGCCAAGCAATGTCGTCAGTCCGTCGCCTTTGGAAGATGCTAGATTCAATCATGGCCGTACATTCCGAGATCTAACGACCAATGAGCTTCGTCTCCGCCATCACTCTTCTTCTTCGAATTGTTATGAGGGACGATACTTGACATTCTTCGTCTCCGTTCGACGCGCAGCTGCCCAAGAGAAAGAAAAAGCTCAGGCATCTTGGATAGAGCACCTGAATGCTCCGCTTGAGGTGATAGATCCGGAAATGGCTGACATTATTGAGCTTGAGAAAGCTCGTCAATGGAAGGGACTTGAGCTCATACCTTCAGAGAATTTTACCTCATTATCAGTAATGCAAGCTGTTGGGTCAGTGATGACTAATAAATACAGTGAAGGATATCCAGGAGCCAGATACTATGGCGGAAATGAGTATATTGATATGGCAGAGTCTTTATGTCAGAAGCGGGCATTAGAAGCATTTCAGTTGGACCCTGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGTTCCCCTGCAAACTTCCAAGCATATACTGGACTGTTAAAACCTCATGAGAGGATTATGGCTCTTGATTTGCCACATGGTGGTCATCTTTCGCATGGTTATCAGACAGATACCAAGAAGATATCTGCTGTGTCAATATTCTTCGAGACCATGCCGTATAGGTTGAATGAGACCACAGGTTACATTGACTATGAACAGTTGGAAAAAAGTGCTACACTTTTCCGTCCAAAACTCATTGTTGCTGGTGCAAGTGCGTATGCTCGTCTTTATGACTACGGGCGCATCCGCAAGGTATGTGACAAGCAGAAAGCTATTATGTTGGCTGATATGGCTCATATTAGTGGTTTGGTTGCTGCGGGTGTCATTCCATCTCCTTTTGAATATGCTGATATAGTGACTACAACAACACACAAGTCACTCCGCGGCCCGCGTGGGGCTATGATTTTTTTCAGGAAGGGGGTGAAGGAGATTAACAAGCAAGGGCAAGAAGTGTTTTATGATTATGAAGACAAAATTAATCAAGCTGTGTTTCCTGGACTTCAAGGTGGTCCACACAACCACACTATTGCTGGTTTGGCAGTCGCACTGAAACAGGCAACCACTCCGGAGTACAAAGCCTACCAAGAGAAAGTTCTTCATAATTCCTCAAAATATGCTCAGAGTTTAATTGAGATGGGCTATGATCTTGTATCTGGTGGAACTGATAACCATTTGGTCTTGGTGAATTTGAAAAACAAGGGTATTGATGGCTCCAGAGTTGAAAAGGTTCTAGAGGCAGTTCATATAGCAGCCAATAAAAATACTGTTCCAGGCGATGTATCTGCTATGGTTCCGGGTGGCATCCGAATGGGGACCCCTGCTCTCACTTCAAGAGGGTTTATTGAGGAAGATTTTGTTAAAGTAGCCGAATTCTTTGATGCAGCTGTGAAGTTGGCCTTGAAGATCAAGGCACTCACCAAAGCGGTCAATGGCACTCTCAAGCTCGACTCTGAGTTAAGAAAACAGCATCCCTCCACCTTCCTCTCCGTCGAGAAGAATTCAAGCTTTGCACATCAAAAAAGCCAAGCAGTAACTCATTTGGAGAGAATATCGGAGCCGAGGCATCTGGACTTCCACAAAGCTCTTTCTTTGATAAAAGAGAATAAGGCGGCCGATCCGTCTCCATATATTCCCTTACTGGAAGAATGTATGAACAGAAATTCGGCTTTTGAAACAGAAGCTATTCATTCTCATATCATTAAAAAAGGAATCCACGAAGAACTATTTCTCATGACATTCCTGGTGAATGTTTATGCGAAATGCGGTAACATGGAATATGCCCGCAAAGTTTTCGACAATTTGCTGAGGAGAAATGTTGTTGCCTGGACAACCCTAATGACAGGATATGTTCACCAATTGCAGCCACAGGTTGCAATTGAAGTTTTCCTCGAAATGTTAGATGCAGGGGCTTATCCAACAAACTACACTCTGGGAATTGTTCTAAGCGCATGCACTTCCTCAAACTCCACTGAATTTGGGAGGCAAATTCATGCCTACATTATTAAATACCACCTTGATTTTGACACTAGTATTGGGAACTCTCTTTCAAGCTTTTACTCTAAAATCCGGAAGTTGAAATCTGCCCTAAAATCGTTTCGGAGGATCCAAGAAAAGAATGTGATCTCTTGGACTGCAGTTATATCGGCTTGTGGGGAAAACGGGGCTGCAGCACAGGGTCTGAGTTTTTTTGCAGAAATGTTGGCTCAAGGCATTGAACCTAATGAGTTCACCTTCACTAGTGTCTTGAGCTTGTGCTGTGTAACGCTGACATTGGGTTTAGGAGCTCAAACTCACTCGTTAAGCCTGAAACTGGGCTATGAATCAAGCTTGCCTGTAAAAAACTCTGTGATGTACTTGTACTTAAAATGTGGATGGATTAATGAGGCTTACAAGGTGTTTGAAGGAATGGAAGTTGTCAATTTAGTGACGTGGAATGCAATGATTGCAGGCTATGCAAAAATGGTGGATTCTAACGATCTCTCAGCATACCGAAAGGGAAATGAAGCCTTGAATATTTTCTTGAAATTGTATCGATCGAATATAAAGCCCGATTTGTTCACATTTTCTAGTGTTTTAACTGTGTGTAGTAGTTTGGTGGCCTTAGAACACGGGGAGCAAGTTCATGCTCAAACCATCAAGACCGGATTTCTGTCCGATGTTGTAGTGGGAACTGCACTTGTTAATATGTATAATAAATGTGGAAGCATCGAAAAAGCGTGTAGGGCTTTCCTTGAGATGTCCACTCGAACTTTAATATCGTGGACTTCGATGATAACTGGATTTTCACAGCACGGACGGTCTCAACAAGCCCTTCAGCTTTTCGAAGACATGTTACTTGCAGGGGTTAGGCCAAACCAGGTGACTTTTGTGGGTGTTTTATCAGCTTGTAGCCATGCCGGAATGGTAGAAGAAGCATTTGGGTATTTCCAACTGATGCAAAAGGAGTATAATATTAGGCCTGTCATGGATCACTTTGCCTGCATGATTGATATGCTTGTGCGATTGGGTCGGCTGGATGAAGCTTTTGATTTCATAAAGAAGATGGATTTTGAGCCTAATGAGTGCATATGGAAGATCTTAGTTGCAGGCTGTAGAATTCAAGGGAATTTAGAACTCGGGTTTTATGCAGCTGAGGAGCTCCTCAAGCTCAAGCCTAGAGATACCGAGACTTACGTCTCGTTGCTGAACATGTACCTCTCGGCAGAGCGGTATACGGATGTTTCTAGAGTGAGAAAGCTGATGAAGGAGGAGAAACTTGGGAAATTGAATGATTGGAGCTGGATTAGCATTCAAAACAGGGTTTGTTCATTTAAACCCAACGATAAGTCCCATTATAACAGTAAAGAGATGTATGAACTATTAGAGAATTTACTTGAAAAAGTCAAGAATCTTGGGTATGAGTCTGTTGAGTGTCTAGAAGTAGAAGAAGAAGAAGAAGCGGAAAATGAAGAAAAAGTTCTTCAATCTGCCGTTCATCACAGTGAAAAGTTAGCCGTTGCTTTTGGCTTGTTGAAATTGCCAAATGCTGCACAGATTCGGGTTATCAAGAGCACCACCATGTGTGGGGACTGCCATAGCTTTTTAAGGTTTGTTTCTGTATTGACTGCTAGAGAAATCATCATCAGAGATGGTAAGAGGCTTCATAAATTTGTCAACGGACAGTGTTCTTGTGGAGATAGCAATTTTGCCTGA 3765 42.79 MRDVPRSIQRPSNVVSPSPLEDARFNHGRTFRDLTTNELRLRHHSSSSNCYEGRYLTFFVSVRRAAAQEKEKAQASWIEHLNAPLEVIDPEMADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFQLDPAKWGVNVQSLSGSPANFQAYTGLLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNETTGYIDYEQLEKSATLFRPKLIVAGASAYARLYDYGRIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGQEVFYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQATTPEYKAYQEKVLHNSSKYAQSLIEMGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFVKVAEFFDAAVKLALKIKALTKAVNGTLKLDSELRKQHPSTFLSVEKNSSFAHQKSQAVTHLERISEPRHLDFHKALSLIKENKAADPSPYIPLLEECMNRNSAFETEAIHSHIIKKGIHEELFLMTFLVNVYAKCGNMEYARKVFDNLLRRNVVAWTTLMTGYVHQLQPQVAIEVFLEMLDAGAYPTNYTLGIVLSACTSSNSTEFGRQIHAYIIKYHLDFDTSIGNSLSSFYSKIRKLKSALKSFRRIQEKNVISWTAVISACGENGAAAQGLSFFAEMLAQGIEPNEFTFTSVLSLCCVTLTLGLGAQTHSLSLKLGYESSLPVKNSVMYLYLKCGWINEAYKVFEGMEVVNLVTWNAMIAGYAKMVDSNDLSAYRKGNEALNIFLKLYRSNIKPDLFTFSSVLTVCSSLVALEHGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIEKACRAFLEMSTRTLISWTSMITGFSQHGRSQQALQLFEDMLLAGVRPNQVTFVGVLSACSHAGMVEEAFGYFQLMQKEYNIRPVMDHFACMIDMLVRLGRLDEAFDFIKKMDFEPNECIWKILVAGCRIQGNLELGFYAAEELLKLKPRDTETYVSLLNMYLSAERYTDVSRVRKLMKEEKLGKLNDWSWISIQNRVCSFKPNDKSHYNSKEMYELLENLLEKVKNLGYESVECLEVEEEEEAENEEKVLQSAVHHSEKLAVAFGLLKLPNAAQIRVIKSTTMCGDCHSFLRFVSVLTAREIIIRDGKRLHKFVNGQCSCGDSNFA 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 827380 835579 - BLOR08586 Blo18g00098 73402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00098 1254 Pfam DYW family of nucleic acid deaminases 1172 1251 IPR032867 GO:0008270
Blo18g00098 1254 SUPERFAMILY TPR-like 602 1097 IPR011990 GO:0005515
Blo18g00098 1254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 941 975 IPR002885 -
Blo18g00098 1254 Gene3D - 114 387 IPR015421 GO:0003824
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 681 781 IPR011990 GO:0005515
Blo18g00098 1254 Pfam Serine hydroxymethyltransferase 86 482 IPR039429 -
Blo18g00098 1254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 730 764 IPR002885 -
Blo18g00098 1254 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 562 1189 - -
Blo18g00098 1254 Gene3D Aspartate Aminotransferase, domain 1 89 499 IPR015422 GO:0003824
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 943 976 IPR002885 -
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 631 664 IPR002885 -
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 1016 1040 IPR002885 -
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 978 1011 IPR002885 -
Blo18g00098 1254 TIGRFAM PPR: pentatricopeptide repeat domain 732 766 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat family 943 988 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat family 628 675 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat family 729 777 IPR002885 -
Blo18g00098 1254 SUPERFAMILY PLP-dependent transferases 77 507 IPR015424 -
Blo18g00098 1254 MobiDBLite consensus disorder prediction 1 21 - -
Blo18g00098 1254 Hamap Serine hydroxymethyltransferase [glyA]. 84 518 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Blo18g00098 1254 Pfam PPR repeat 805 828 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat 1018 1039 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat 915 938 IPR002885 -
Blo18g00098 1254 Pfam PPR repeat 833 844 IPR002885 -
Blo18g00098 1254 Pfam E motif 1060 1119 IPR046848 -
Blo18g00098 1254 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 308 324 IPR019798 GO:0030170
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 1006 1227 IPR011990 GO:0005515
Blo18g00098 1254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Blo18g00098 1254 PANTHER OS01G0913400 PROTEIN-RELATED 562 1189 - -
Blo18g00098 1254 CDD SHMT 89 496 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 782 852 IPR011990 GO:0005515
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 853 1005 IPR011990 GO:0005515
Blo18g00098 1254 Gene3D Tetratricopeptide repeat domain 545 680 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01790 Blo18g00098 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00318 Blo-Chr16:8160594 Blo18g00098 Blo-Chr18:827380 0 dispersed
Blo18g00098 Blo-Chr18:827380 Blo08g00213 Blo-Chr8:2487371 9.85E-15 dispersed
Blo18g00098 Blo-Chr18:827380 Blo01g00337 Blo-Chr1:4032346 1.37E-177 transposed
Blo18g00098 Blo-Chr18:827380 Blo12g00102 Blo-Chr12:7371193 1.49E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00098 - - zju:107427123 1084.71