Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00018 ATGGATATCATTGGGGTTGAAGAAAATTTGTTTGCAATCAGTGATGCCAAGCTACATGGAGAGATGTGCAAAATGCTTTCTGCAATTTATTGCAAGGTGTTGTCTGTTTTCCCTTCCTTAGAAGCAGCAAAGCCAAGAAGTAAGTCAGGCATTCAAGCATTATGCTCATTGCATGTGGCACTAGAAAGGGCAAAAAATATTCTTCAACACTGCTCAGAATGTAGCAAACTATATTTGGCCATAACTGGAGAGTCAGTCCTTGCAAAATTTGAGAAAGCAAGATGTTCTCTTCAAGACAGTCTCGGTCGCGTTGAAGATATCGTTACACAACCGACTGGCTCTCAGATGCAAAGTGCATTTTCTACCTGTTTACGAAATAGCCAGTCAAGTATGATACAGGAGATCATTAGCGAACTTGATGGAATGATGTTTGCTCTTGATCCATTGGAGAAGCAAGTAGGCAATGATTTGATCCTACTACTTCAGCAGGGAAGAAAATTCAATGACTCCAATGACAATAATGAGCTTGAATCTTTTCATCAAGCTGCATTAAAACTTGGTATAATCTCTTCTAGGACAGCCCTTACAGAGAGAAGAGCACTAAAGAAACTTGTTGAAAAAGCTCGTGCTGAAGAAGACAAGAGGAAGGAATCTATTGTCGCTTACCTTTTTCATCTCATGAGGAAATACTCCAAATTATTTCGGAATGAGTTTTCAGAGGACAACGACTCACAAGGTTCTACGCCAAGCTCACCTACTGTGCAAACAACACTTGATGACTGCAGTCCAAGTGGCAACAATCAAACCTTTGAAAGGCAGCTATCAAAGCTTAGTTCTTTTAATTTCAAGCCCAGTAATAAGAGATCAGGGCAGATGGCCCTCCCACCTGAGGAATTGAGGTGTCCAATATCATTGCATCTTATGTACGACCCTGTCATCATAGATTCTGGTCAGACGTATGAAAAGATTTGTATTGAGAAATGGTTTAACGATGGTCATAGCTCCTGCCCAAAGACTCAACAGAAGCTCTCTCATCTTTCTCTGACACCTAATTACTGTGTTAAGAGCCTCATTGCTAGTTGGTGTGATCAGAATGGAGTTTGTCTTCCTGATGGTCCTCCAGAGAGTCTGGATTTCAATTATTGGAGACTTGCATTATCTGAATGTGATTCTGTAAATTCAAGATCTATGGACAGCCTTGGCTCTTGCAAACTGAAGGGGGTTAAAGTTGTTCCATTAGAGGAGAGTTGTATTGTTGAGGAGACTGAAGGAAATGCTATAGATAGTTTCTCAGCAGAGCCGCACGACTCTGGTTTTAATATATTTGATAAATACAAGTACTTTCTGATGGTTTTGAATGAGGGAGAAGACTTGAAGAAAAAGTGCGAGGTGGTGGAACAGATAAGGTTCTTACTGAAGGATGATGAGGAGGCCAGGATTCTTATGGGAGCCAATGGATTTGTTCAAGCACTCTTGCAGTTTCTACAAGTAGCTGTTTATGAAGAGAATTCAAAAGCTCAAGAAAGTGGAGCCATGGCATTATTCAACCTTGCTGTCAACAATAACAGAAACAAGGAAATGATGTTGGAAGCTGGGGTTGTTTCACTGTTGGAGCAAATGACCTTGAACTCCAACTCCCATGAATATGCAACGGCCCTCTATCTGAATCTTTCTTGCCTCGAAGATGCTAAGCCTGTCATTGGTTTGAGCTGCGCCGTCCCTTTCTTGAGTCATCTTCTTCAAACCAATGCAGGACCCCTCTGCAAGCTTGATGCGCTGCATGCTCTTTACAATCTATCTACTGTGCCCTCCAACATTTCTCATCTCCTTTCTGCCGGTGTCATAAGTGGCCTTCAATCCCTACTTGCAGATCCTGATGATCATGGATGGACAGAGAAAGCCATAGCAGTCTTGATAAATTTGGCTTTAACTCAATCAGGACGAGATGAAATGATATCGAGCCCTGGCCTTATCAGTGCATTGGCAACAATTTTGGACACTGGCGATGCTGTAGAGCAGGAGCAATCTGTCTCTTGTCTGTTGATGTTGTGTGAGGGAAACGAAAGATGCAGTCAAATGGTGCTACAAGAAGGGGTGATTCCCGGATTAGTGTCAATCTCTGTTAATGGGACTATGAAAGGGAAGGAGAAGGCTCAGAAACTTTTAATGTTGTTCCGCGAGCAAAGACAACGAGACCAGTCGCGGATGGAATGGGGTGAGAGTGGTGACATTTCCAATCCTCCCTCGGAATCAAAGCCGCATTGCAAATCGATCTCGAGATTAAAAATGGGAAAAGCTTTCAGCTTTTTATGGAAGAGCAAAAGCTGTTCAGTTTACCAGTGTTGA 2346 42.28 MDIIGVEENLFAISDAKLHGEMCKMLSAIYCKVLSVFPSLEAAKPRSKSGIQALCSLHVALERAKNILQHCSECSKLYLAITGESVLAKFEKARCSLQDSLGRVEDIVTQPTGSQMQSAFSTCLRNSQSSMIQEIISELDGMMFALDPLEKQVGNDLILLLQQGRKFNDSNDNNELESFHQAALKLGIISSRTALTERRALKKLVEKARAEEDKRKESIVAYLFHLMRKYSKLFRNEFSEDNDSQGSTPSSPTVQTTLDDCSPSGNNQTFERQLSKLSSFNFKPSNKRSGQMALPPEELRCPISLHLMYDPVIIDSGQTYEKICIEKWFNDGHSSCPKTQQKLSHLSLTPNYCVKSLIASWCDQNGVCLPDGPPESLDFNYWRLALSECDSVNSRSMDSLGSCKLKGVKVVPLEESCIVEETEGNAIDSFSAEPHDSGFNIFDKYKYFLMVLNEGEDLKKKCEVVEQIRFLLKDDEEARILMGANGFVQALLQFLQVAVYEENSKAQESGAMALFNLAVNNNRNKEMMLEAGVVSLLEQMTLNSNSHEYATALYLNLSCLEDAKPVIGLSCAVPFLSHLLQTNAGPLCKLDALHALYNLSTVPSNISHLLSAGVISGLQSLLADPDDHGWTEKAIAVLINLALTQSGRDEMISSPGLISALATILDTGDAVEQEQSVSCLLMLCEGNERCSQMVLQEGVIPGLVSISVNGTMKGKEKAQKLLMLFREQRQRDQSRMEWGESGDISNPPSESKPHCKSISRLKMGKAFSFLWKSKSCSVYQC 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 310878 314809 + Bma000189.1 Bma01g00018 74535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00018 781 SUPERFAMILY RING/U-box 288 371 - -
Bma01g00018 781 SMART arm_5 475 519 IPR000225 GO:0005515
Bma01g00018 781 SMART arm_5 521 559 IPR000225 GO:0005515
Bma01g00018 781 SMART arm_5 560 601 IPR000225 GO:0005515
Bma01g00018 781 MobiDBLite consensus disorder prediction 239 266 - -
Bma01g00018 781 Gene3D - 451 584 IPR011989 -
Bma01g00018 781 CDD RING-Ubox_PUB 299 341 IPR045210 -
Bma01g00018 781 Pfam U-box domain 296 365 IPR003613 GO:0004842|GO:0016567
Bma01g00018 781 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 739 - -
Bma01g00018 781 Gene3D - 585 724 IPR011989 -
Bma01g00018 781 SMART Ubox_2 298 361 IPR003613 GO:0004842|GO:0016567
Bma01g00018 781 MobiDBLite consensus disorder prediction 732 755 - -
Bma01g00018 781 SUPERFAMILY ARM repeat 453 725 IPR016024 -
Bma01g00018 781 PANTHER U BOX DOMAIN-CONTAINING 1 739 - -
Bma01g00018 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 368 IPR013083 -
Bma01g00018 781 MobiDBLite consensus disorder prediction 240 266 - -
Bma01g00018 781 ProSiteProfiles U-box domain profile. 294 368 IPR003613 GO:0004842|GO:0016567
Bma01g00018 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 613 656 IPR000225 GO:0005515
Bma01g00018 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 532 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00018 Bma15g00238 CCT
Bma01g00018 Bma06g00574 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00018 Bma-Chr1:310878 Bma06g00119 Bma-Chr6:1626872 6.05E-79 dispersed
Bma01g00562 Bma-Chr1:4972695 Bma01g00018 Bma-Chr1:310878 1.61E-11 transposed
Bma07g00845 Bma-Chr7:28464776 Bma01g00018 Bma-Chr1:310878 1.90E-18 transposed
Bma01g00018 Bma-Chr1:310878 Bma15g00238 Bma-Chr15:2376515 1.28E-78 wgd
Bma01g00018 Bma-Chr1:310878 Bma06g00574 Bma-Chr6:30839405 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00018 - - qsu:112018265 1108.98