Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00029 ATGGGGGTCTGTTTAATCGAACAGCTCAACGCTCAGCCCTTTTGGATTACTGCGCTGTTCATTTTGGGTTCTCTATCCGTCCTCAAATTCCTTGTGGCTTTTCTCAAATGGGTGTACGTCAATTTCCTACGACCACCGAAGAACCTCAGGAAATATGGATCCTGGGCACTCGTCACGGGTCCGACCGACGGCATTGGCAAGGGCTTCGCTTTTCAGTTGGCTCTCAAAGGTCTTAACCTTGTTTTGGTGGGCCGCAATCCTGATAAGCTTAAAGATGTGTCGGATTCAATCCAGGCCAAATACGGAAACATCCAGATCAAAAACGTTGTCGTTGATTTCTCCGGCGACCTCTCAGAAGGGGTACAGAGGATTACCGAAGCCATTGAAGGATTAGATGTTGGGACTTTAATCAATAACGTGGGGATATCATACCCGTACGCGAGATTTTTTCACGAGTTGGATGAAGAGCTATTGAAGAACTTGATCAAGATCAACGTTGAAGGAACTACCAAAGTTACTCAGGCTGTTCTTCCCGGAATGCTCAAGCGGAAGAGAGGAGCAATTGTCAATATTGGTTCTGGTGCAGCAATTGTCATTCCATCTGATCCCCTTTACGCTGTTTATGCTGCTACAAAAGCGTACATCGATCAATTCTCGAGAAGCCTCTACGTTGAATACAAGAAGAGTGGCATAGATGTACAGTGCCAGGTTCCGTTATACGTAGCGACTAAGATGGCATCAATCAGGCGATCGTCGTTGTTCGTTCCTTCGACCGATGACTATGCAAGAGCAGGGTTGCGTTGGATCGGATACGAGCCAAGGTGCACACCCTATTGGCCCCACTCACTGCTGTGGGGGTTGGCTCTCTCCTTGCCCGAGTCCATCATCGATGCATGGCGCCTCAAGTTCTGTCTGGGTATTCGGAAGAGAGGACAGGCCAAAGACAGTAGAAGACGGAGT 960 48.33 MGVCLIEQLNAQPFWITALFILGSLSVLKFLVAFLKWVYVNFLRPPKNLRKYGSWALVTGPTDGIGKGFAFQLALKGLNLVLVGRNPDKLKDVSDSIQAKYGNIQIKNVVVDFSGDLSEGVQRITEAIEGLDVGTLINNVGISYPYARFFHELDEELLKNLIKINVEGTTKVTQAVLPGMLKRKRGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRSLYVEYKKSGIDVQCQVPLYVATKMASIRRSSLFVPSTDDYARAGLRWIGYEPRCTPYWPHSLLWGLALSLPESIIDAWRLKFCLGIRKRGQAKDSRRRS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 395317 396736 + Bma030163 Bma01g00029 74546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00029 320 PANTHER RH59310P 3 319 - -
Bma01g00029 320 Gene3D - 49 273 - -
Bma01g00029 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Bma01g00029 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Bma01g00029 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Bma01g00029 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Bma01g00029 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Bma01g00029 320 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 3 319 - -
Bma01g00029 320 PIRSF 11-beta-HSD1 6 314 - -
Bma01g00029 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Bma01g00029 320 Pfam short chain dehydrogenase 55 248 IPR002347 -
Bma01g00029 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Bma01g00029 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Bma01g00029 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Bma01g00029 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 49 298 IPR036291 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00029 Bma15g00252 CCT
Bma01g00029 Bma14g01624 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00029 Bma-Chr1:395317 Bma15g00252 Bma-Chr15:2515983 1.29E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00029 K10251 - jre:108990665 572.392