Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00729 ATGGATCAGCGCCGTGTTTCCATAGAATCGAGATTTAGACGTGTTTGTGTTTTCTGCGGTAGCAGCCCGGGCAAAAATCCTAGCTACCAACTTTCTGCAACTCAACTTGGCCAGCAACTGGTCGAACGGAATATTGACTTGGTTTATGGAGGTGGAAGTATTGGCTTGATGGGTTTAGTCTCTCACGCTGTCTATGATGGTGGTCGCCATGTGTTGGGAGTGATTCCCAGAACACTAATGCCAAGAGAGATAACAGGAGAGCCTGTGGGAGAAGTGAGAGCTGTATCGGGTATGCACCAACGCAAAGCCGAGATGGCTCGTCAAGCTGATGCATTTATTGCGCTGCCGGGTGGGTATGGCACCTTGGAAGAGCTCTTGGAAGTAATCACCTGGGCTCAGCTGGGAATCCACGATAAACCGGTGGGTCTGCTAAATGTTGATGGCTACTACGACTCACTCCTATCATTCATTGACAAAGCTGTTGACGAAGGTTTCATAACTCCAGCTGCCCGTAACATTATTGTGTCTGCCCAAACTGCCCAGGAACTCATGTCTAAGCTCGAGGAATATAGTCCTAATGAATCTGAGATCACCCCTAAGCTGAGGTGGGAAATGGAGCAGCATATGGGTTTCGCTGCAAAGTCAGAGATAGCTCGTTGA 660 48.79 MDQRRVSIESRFRRVCVFCGSSPGKNPSYQLSATQLGQQLVERNIDLVYGGGSIGLMGLVSHAVYDGGRHVLGVIPRTLMPREITGEPVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYDSLLSFIDKAVDEGFITPAARNIIVSAQTAQELMSKLEEYSPNESEITPKLRWEMEQHMGFAAKSEIAR 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6668243 6669811 - Bma000940.1 Bma01g00729 75246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00729 219 Gene3D - 2 189 - -
Bma01g00729 219 Pfam Possible lysine decarboxylase 57 186 IPR031100 -
Bma01g00729 219 SUPERFAMILY MCP/YpsA-like 11 190 - -
Bma01g00729 219 PANTHER LOG FAMILY PROTEIN YJL055W 6 216 - -
Bma01g00729 219 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 6 216 - -
Bma01g00729 219 TIGRFAM TIGR00730: TIGR00730 family protein 14 190 IPR005269 GO:0009691|GO:0016787
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00729 Bma04g00428 CCT
Bma01g02581 Bma01g00729 CCT
Bma01g00729 Bma04g00242 CCT
Bma01g02363 Bma01g00729 CCT
Bma01g00729 Bma04g00428 ECH
Bma01g02581 Bma01g00729 ECH
Bma01g00729 Bma01g02581 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00729 Bma-Chr1:6668243 Bma11g00179 Bma-Chr11:1610589 3.25E-119 dispersed
Bma01g00729 Bma-Chr1:6668243 Bma01g02363 Bma-Chr1:81321365 2.01E-132 wgd
Bma01g00729 Bma-Chr1:6668243 Bma04g00242 Bma-Chr4:2091144 3.96E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00729 K22522 - tcc:18591534 386.341