Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00959 ATGTCTAACTCAGCGATTGAGGTTCCTCCAAAGGGGGGGTTTAGTTTTGATCTCTGCAGAAGAAATGCTATGCTGGAAAAGAAGGGACTTCGTGGTCCGTCTTTTCTGAAGACAGGAACTACTATTGTTGGTTTGATCTTCAAGGATGGTGTTATTCTCGGAGCAGATACAAGAGCCACTGAAGGCCCTATAGTTGCTGATAAGAACTGCGAGAAAATTCATTACATGGCACCAAATATCTATTGCTGTGGAGCAGGAACAGCAGCTGATACAGAGGCAGTAACAGACATGGTGAGCTCACAGTTGCAATTGCACCGCTATCATACTGGTCGAGAATCAAGAGTTGTTACAGCCTTGACCCATCTAAAAAAGCACCTTTTTAGCTACCAAGGCTATGTTCAAGCTGCTTTGGTGCTTGGCGGGGTTGATATTACTGGACCTCATTTACATACGATATACCCCCATGGATCAACTGACACACTACCGTTTGCAACAATGGGTTCCGGGTCTCTAGCTGCAATGGCTGTTTTCGAGTCAAAGTATAAAGAAAGCCTGACTAAGGATGAGGGGATCCATCTTGTATCTGAGGCGATATGCTCTGGCATTTTCAATGACTTAGGAAGTGGAAGCAACGTCGACATCTGTGTGATAACCAAGGGACACAAAGAGTACCTAAGAAACCATATGTCGCCGAACCCTCATACTTATGTTAGTGCTAAAGGTTATTCCTTTTCGAAAAAGACCGAGATTCTCATGACAAAGGTAACATCTTTGAAGGAAAAAGTGGAAACTATTGAAGGAGGAGATGCAATGGAAGAGTAA 822 43.67 MSNSAIEVPPKGGFSFDLCRRNAMLEKKGLRGPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTHLKKHLFSYQGYVQAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYKESLTKDEGIHLVSEAICSGIFNDLGSGSNVDICVITKGHKEYLRNHMSPNPHTYVSAKGYSFSKKTEILMTKVTSLKEKVETIEGGDAMEE 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9425944 9428603 + Bma001184.1 Bma01g00959 75476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00959 273 Pfam Proteasome subunit 37 217 IPR001353 GO:0005839|GO:0051603
Bma01g00959 273 PRINTS Proteasome component signature 167 178 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bma01g00959 273 PRINTS Proteasome component signature 178 189 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bma01g00959 273 PRINTS Proteasome component signature 47 62 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bma01g00959 273 PRINTS Proteasome component signature 203 214 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bma01g00959 273 CDD proteasome_beta_type_7 40 228 - -
Bma01g00959 273 PANTHER PROTEASOME SUBUNIT BETA 21 233 - -
Bma01g00959 273 ProSitePatterns Proteasome beta-type subunits signature. 43 90 IPR016050 GO:0005839|GO:0051603
Bma01g00959 273 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 40 271 IPR029055 -
Bma01g00959 273 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 12 229 IPR029055 -
Bma01g00959 273 ProSiteProfiles Proteasome beta-type subunit profile. 39 217 IPR023333 -
Bma01g00959 273 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 21 233 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02238 Bma01g00959 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00959 Bma-Chr1:9425944 Bma01g01322 Bma-Chr1:18134284 8.41E-29 dispersed
Bma01g00959 Bma-Chr1:9425944 Bma02g00375 Bma-Chr2:5912745 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00959 K02739 - jre:109010186 497.278