Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01364 ATGGCCGAGCGAAGACGACGAAAGCGACTGAATGACAGGCTGACTATGCTAAGATCCATTGTCCCTAAGATTAGCAAGGTAAACCATGAATCCGAACAGATGGACAGAACTGCTATACTTGGAGACGCCATTGATTACATGAAAGAACTGTCAGAGAAAATCAGCTACTTGAAACAAGAAATCGAAGTGGGTTCCGATCCATTTGACTCAGTGAGCCATTTTAAGGACGTCAAATTAAATGAATTCTTTGTTAGAACTTGCCCAAAGATGGAGGTGGAAGAAAGAAACGGCGAAACTCGGATTACGATTTGCTGCTCAGGAAAGCCTGGTTTATTATCATTAACAGTGAATATCCTCGACGCTTTAGGACTCGAGGTTAATGAGTGTGTGATTAGCTCCTTCAACAACTTCACAATGCATGCTTCTTGTTCGCAGGTAAATAAAAAAGAATCTCTTCTTTTCTGTTCAAGTTCTGGGTTTTGTTTTAATTGGGTGAAAACTGGAATTGAAGCAGGGTATAATGGCTGCTCCTGA 534 41.2 MAERRRRKRLNDRLTMLRSIVPKISKVNHESEQMDRTAILGDAIDYMKELSEKISYLKQEIEVGSDPFDSVSHFKDVKLNEFFVRTCPKMEVEERNGETRITICCSGKPGLLSLTVNILDALGLEVNECVISSFNNFTMHASCSQVNKKESLLFCSSSGFCFNWVKTGIEAGYNGCS 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20572559 20573206 - Bma001695.1 Bma01g01364 75881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01364 177 CDD ACT_UUR-ACR-like 99 139 - -
Bma01g01364 177 SMART finulus 1 56 IPR011598 GO:0046983
Bma01g01364 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 50 IPR011598 GO:0046983
Bma01g01364 177 PANTHER DNA BINDING PROTEIN 1 153 - -
Bma01g01364 177 Pfam Helix-loop-helix DNA-binding domain 2 50 IPR011598 GO:0046983
Bma01g01364 177 Gene3D - 1 64 IPR036638 GO:0046983
Bma01g01364 177 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 153 - -
Bma01g01364 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 65 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01364 Bma04g00423 CCT
Bma01g01364 Bma02g00102 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01364 Bma-Chr1:20572559 Bma15g01082 Bma-Chr15:43172903 6.72E-37 dispersed
Bma01g01364 Bma-Chr1:20572559 Bma02g00102 Bma-Chr2:926035 4.85E-55 wgd
Bma01g01364 Bma-Chr1:20572559 Bma04g00423 Bma-Chr4:3423204 1.91E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56723 PF00010 HLH 1.60E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01364 - - vra:106764382 180.259