Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02249 ATGGAGTTTTTTAGAGCTTTTTGTGAAGGAGAGTGTCACTCATCAAGTTCATTAATTTCCCTTGAAGATTGGGTGGATTTTGTACCAGATTTTTTTGTTCAACATCCTTATTTTCTGGAGCATGAGGAACTGAGCTTCCCACCATTCACTGTCGGCAACAGTCATCAAGCCACTGTTGGTGTTGCAGGGATTAATGATTACTGGTTGCATTCTTTAGATTCTTTCAACACTGACTTCCACTGGAACAAACCAGAGAGTAGTCTTTGTGGTAATGGTAATAATAGTGTTTTAATATCTGGTTCACTGCATGAAGAAAAGTACCTTAATGGTTGTAATCAGGTTCCTACAGAAAACAATTTGTCGGTGATTCCACGTGATGGAATGGTGGATGAAGGCTCTTTATTCGCAGAATGGACTGAAGTTGTGCCTGATGGTACTGCTTGTGTTGATGAAGGTGTGGGCTATAAGAAATTTGAAAATCACGAGGAATCTGACGAGGGATTGCCCCTTAAAAGGAAATTTCATTGTCTAGAAGTTGAAAAAAGAGTTGATCATAAAAACACTACCAACTCATGTGACAACCTGAAGAAAAGAACTAAGATTTCACGGGATGGCCAGCATGACAGCAATACTGTAAAATCAAAGAAAGGCCAGAAGCACGCCCCAAAAGGGAAATCTGAAGAAGAGGGCAAAACTGTATCTGATGGACAGAGCTGTAGCAGTTCCAGCTCAGAAGAAGAGATTGCATCTTGTGAAAATAATGGAGAACCAACTTCAGAGTCTATGGCTAGTGCAGTAACAGTTTGTGGAAAGATTAGAGCAAGTAGAGGGTCAGCGACTGATCCCCAGAGTGTTTATGCAAAGAAAAGAAGAGAAAAAATTAACGAGCGGCTGAAAATCTTACAAACTCTTGTACCCAATGGAACAAAGGTTGACATTAGCACTATGCTCGAGGAAGCAGTCCAGTATGTGAAATTTTTGCAACTCCAAATTCAGCTTTTAAGCTCAGATGACTTGTGGATGTACGCTCCAGTGGCATTTGATATTGCTAGAGCTTGTACCGTTGGTCTGGCTGATATTTGTTGTGGTGTTTCTTCTGAGGTGCCAGCATCATCTGTCATTCAAGGCATTTGCTCTACTGTCTTTCAAAATGCACTCACCTTTTTTGTCTCCCCATTCGAAGGAAAGGATATCTTTCAGATTGTTGGTAAAGATGTTTTGAAGATTCAAGATTCTGCTGATATCTATGCTGAGCTGAAAGAAAAGTATGCGGACGAAGACGAAACCTCATTGGTTAAGCTCACCAAGTTTAGTGCGCTCAGTCTACTATGGGTTTTTTTTTCTTGTCCTAAAAACTTGCTGGCAGCTTGTTTTGAGCTTTTCAATTTGACTACAGACGGAGTACACAAAGAAGGATTATATTTTTTCACTCAAGTGACATGCAAACTTGACAATGCTGGAGCTCTTCAAATGGGTAAAAGAAGTGATAGAAGTGGTGGGCCTGAACCAGTCCATGATTCTATTTTGGCAAACAATAGGAACTGTGAAGTGGTTGAGGAGCACGCATCAGAAAACTGCTTGTTGGGCATGGTTCTTGGAAAAGATCGAATATTTCAAAGCTGGGTATTGTCAAAATACAAGAAGCTATGTTCAACGTCTTCTTCTTTCCATGGTTTATCAGATATTCAATCTGCGATGGACACAATTTTTTCATCATTTTATGAGGCAATGGAAGTAACAGATAGTCACAACTCGAGTGGTGAAGATCATTCTGATTTATCCTTATATGTGGGTCAACAATTTGGGAATAGGCTCTGCAAGCCATGTGACTTTTCCAATGAACTAGTGGGCAAAAATAGTAACTCAAGAGGTTCTGGTGGAACCATTAAAGATGGTGTCAGCAATATAGTTTCGGATCAACATCTTTTTGTAGCCAATCGTGATAATGTTTTCCACACAAATGCAGTAGGCTCAACTTGTAACAGTGGTGGTTCAAGGTCCAATGTTGAAACTCATGAGCCCAGTGACTTGTTTCATGGCAGGTTTACCATGCCCAAGGACCCGTTACTGGACCAGAAACCTTCACCTTTGACAAGAATCCCATTAGACGCAGAGAAGAATTCAATTGAAAGTATAAATCAACTAATAAATGTTGAGAAGAATCAAGTTACAAGTGCTGATCACAACTTTCCAGCTGTAAGATCTTCTAGTCGTGGCTTGGATAATGATTTTACATCTCCTAAACATCATTTTGCAATACCCAATACTCCCACCTCTACTCATGCTTTGTGGTACTCTGATGGGGATCCATCAGCCATGGATATCTTCTCTGCTTCTAAACAGCTCTGGGTGGGGTTTTTTGGCACTGATGTGCCTGAAGCTCATATAAGGTTTCAGTTTGACAGATTTGGCCCCATTGAAGATTTCTTATTTTTCCCGGTCAAAGGATTTGCTTTAATTGAGTACGTCCACATCATTGATGCTATTAGGGCAAGGGAACATAATCGTGGACAGTTTCAATGGTGTATTAAGTTCATGGATGTGGGTGTAGGGACTAGGGGTGCTCTCAATGGTGTTGCTGTTGGTTCTAGTCCTCATATTTATATTGGAAATGTTTCTGGCCAGTGGGAGAAGGATGAGATTTTGCATGAAACAAGGAAAGTACTCAACAAAATTCCGTACCTGGTCACTGATCTTAGCAGTGAAGGTACTTTGCTGATGGAATCTGAAACTCCCGAGGAAGCTGTTGCTGTGATGACACATCTAAGGCAGTATCGTAAAGAAAAGGGTTACCATTGTCCACCTTTAAATGCCAGACCAAGTAATGCTGCAATGCCTTATGTGGATTGTGGAAGAATAACATGTGCTTCAAGTCTTAGCGTCAGAAGTAATAATCCAGGATACACATGTAACGGTGGGATTGGATCACCTCATACTCCCATTGTGCCAGAGAGCCCTAGTGGAAGCTCCAGAACTAGGATGTCTGATTTACAGTCCCTTCTTTTTTCTCTACGTGTGAAATATAACATCAATCAAAATTCTGGTTATTTTGACAACTATATGTCTGGCAATTGCAATTATAACACCAAGAGGGAAGAAGAGAAAGTGCCATCTAGTACTCTCTGGATTAGTTTTCCTAATATAAACTTCCCTTTTGTCACCGATGATGAGTTAATGGCAATTTGCAATCTTGCTATTGCTAATACAGGATCTGTTGTAAGATTTGCTCGATCAAATATGCAGTCAGGTTGTGGTTGGTTTGTTGAGTGCAGTAGTATGGATGCTGCAATCACTGTATTGAAGAATCTACGAGGTTGTCCTGGAATTTTCCTTCGGTTAGAATTCAGTCATCCTGGAAATCATCATACCACACCATTACAAATTAAACATGAAAATCGCCCCACGGAGCTTGTGTCTCCCAGGATAAATTATGAGAATTCTGGATGTGCTTCACAAAGTGGACATTCCTACCAGCCAAATTGGGCTATTTCCAGTGGCCATGTTTCCACTGGTCCTGACCAAATTTGGACGCATAGGAAACCTGAAATGGATCTGCATCCACTGCCAGGGAGCATATCTTCTGTACCAATGGTAACACAAGGGCCTCCTCTGCCACCTCCACAACAAATTCAATCTTCTCCATTTATGCGACCTCTTTATCCCCCTCCAAATACTCCTTGGCCTGTGAGGGGTTTGAATCCTCATTTGCCTCTGAACCCTATATCACCAGGTGCAATGCCTAATACTTTTCCATGTCACGCAGTTGCAGCTCCTTTTGTACCTGCTTCCGTGACACCGCTTACTCAGATTCAGGGGACTCCAGTGCATCAGTTTGACAATATGTTTTCTCAGCCTGTTGCACCACCACGATTATCATCTTTACCACCACCTCAGCCTGAACTGCCACCTCCATTACCTCCTTCTCCACCCCCCTTACCCCAATCAGAGCCACCTCCCCTGCCACCTCCACCCAGTTCTCCCCCTCCCCTGCCAGCTCCACCAGCTGTAGAATCATCACAAATGGAAAGTTCTAGCCACTCGATGCAGTACCAATGGCAGGGCACACTTTGTAAAAGTGGAGTTCATTACTGCACAATATATGCACACAGAGTGGATTCAGAAATTTGCAAATATTCAAATTCCATTTCTGAGCCAACTGAATGGCCAGTGAAATTAGATATGACCAAACGCACAGATTTTCGGCATGTGAAGTCAACATTTTCTAGTGCTCCTCCACATAAAAGGGAGGTGTGTCAGCTGATTCCGTCTTCTGCAGGGAACAATAAAGGCTTTCAGGATTTTGTACTGTACTTGAAGCAGAGGGACTGTGCTGGAGTAATTAAGATACCAGCAACGAAATCCATCTGGGCTAGGCTTCTCTTTATAATTCCTTACTCGGAACACTCGTGTTCCATGCTCTCAATTTCACCTGGTCCAGCTGATAGCCTAATTGCTTTGGTTTTGCCTAAAGAAACTAACTCTGATTGGGCTTGA 4494 41.97 MEFFRAFCEGECHSSSSLISLEDWVDFVPDFFVQHPYFLEHEELSFPPFTVGNSHQATVGVAGINDYWLHSLDSFNTDFHWNKPESSLCGNGNNSVLISGSLHEEKYLNGCNQVPTENNLSVIPRDGMVDEGSLFAEWTEVVPDGTACVDEGVGYKKFENHEESDEGLPLKRKFHCLEVEKRVDHKNTTNSCDNLKKRTKISRDGQHDSNTVKSKKGQKHAPKGKSEEEGKTVSDGQSCSSSSSEEEIASCENNGEPTSESMASAVTVCGKIRASRGSATDPQSVYAKKRREKINERLKILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIQLLSSDDLWMYAPVAFDIARACTVGLADICCGVSSEVPASSVIQGICSTVFQNALTFFVSPFEGKDIFQIVGKDVLKIQDSADIYAELKEKYADEDETSLVKLTKFSALSLLWVFFSCPKNLLAACFELFNLTTDGVHKEGLYFFTQVTCKLDNAGALQMGKRSDRSGGPEPVHDSILANNRNCEVVEEHASENCLLGMVLGKDRIFQSWVLSKYKKLCSTSSSFHGLSDIQSAMDTIFSSFYEAMEVTDSHNSSGEDHSDLSLYVGQQFGNRLCKPCDFSNELVGKNSNSRGSGGTIKDGVSNIVSDQHLFVANRDNVFHTNAVGSTCNSGGSRSNVETHEPSDLFHGRFTMPKDPLLDQKPSPLTRIPLDAEKNSIESINQLINVEKNQVTSADHNFPAVRSSSRGLDNDFTSPKHHFAIPNTPTSTHALWYSDGDPSAMDIFSASKQLWVGFFGTDVPEAHIRFQFDRFGPIEDFLFFPVKGFALIEYVHIIDAIRAREHNRGQFQWCIKFMDVGVGTRGALNGVAVGSSPHIYIGNVSGQWEKDEILHETRKVLNKIPYLVTDLSSEGTLLMESETPEEAVAVMTHLRQYRKEKGYHCPPLNARPSNAAMPYVDCGRITCASSLSVRSNNPGYTCNGGIGSPHTPIVPESPSGSSRTRMSDLQSLLFSLRVKYNINQNSGYFDNYMSGNCNYNTKREEEKVPSSTLWISFPNINFPFVTDDELMAICNLAIANTGSVVRFARSNMQSGCGWFVECSSMDAAITVLKNLRGCPGIFLRLEFSHPGNHHTTPLQIKHENRPTELVSPRINYENSGCASQSGHSYQPNWAISSGHVSTGPDQIWTHRKPEMDLHPLPGSISSVPMVTQGPPLPPPQQIQSSPFMRPLYPPPNTPWPVRGLNPHLPLNPISPGAMPNTFPCHAVAAPFVPASVTPLTQIQGTPVHQFDNMFSQPVAPPRLSSLPPPQPELPPPLPPSPPPLPQSEPPPLPPPPSSPPPLPAPPAVESSQMESSSHSMQYQWQGTLCKSGVHYCTIYAHRVDSEICKYSNSISEPTEWPVKLDMTKRTDFRHVKSTFSSAPPHKREVCQLIPSSAGNNKGFQDFVLYLKQRDCAGVIKIPATKSIWARLLFIIPYSEHSCSMLSISPGPADSLIALVLPKETNSDWA 1497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79661710 79671492 - Bma003102.1 Bma01g02249 76766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02249 1497 MobiDBLite consensus disorder prediction 1279 1347 - -
Bma01g02249 1497 Gene3D - 281 341 IPR036638 GO:0046983
Bma01g02249 1497 SMART finulus 284 333 IPR011598 GO:0046983
Bma01g02249 1497 CDD RRM3_Spen 782 851 - -
Bma01g02249 1497 MobiDBLite consensus disorder prediction 188 262 - -
Bma01g02249 1497 CDD bHLH_AtIND_like 279 341 - -
Bma01g02249 1497 PANTHER NUCLEIC ACID BINDING PROTEIN 345 1496 - -
Bma01g02249 1497 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 345 1496 - -
Bma01g02249 1497 MobiDBLite consensus disorder prediction 1289 1335 - -
Bma01g02249 1497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Bma01g02249 1497 MobiDBLite consensus disorder prediction 188 232 - -
Bma01g02249 1497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 341 IPR036638 GO:0046983
Bma01g02249 1497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 780 874 IPR000504 GO:0003723
Bma01g02249 1497 Pfam Helix-loop-helix DNA-binding domain 288 328 IPR011598 GO:0046983
Bma01g02249 1497 Pfam SPOC domain 1345 1473 IPR012921 -
Bma01g02249 1497 SUPERFAMILY RNA-binding domain, RBD 766 839 IPR035979 GO:0003676
Bma01g02249 1497 MobiDBLite consensus disorder prediction 233 262 - -
Bma01g02249 1497 Gene3D - 771 853 IPR012677 -
Bma01g02249 1497 Coils Coil 702 722 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02249 Bma05g00057 CCT
Bma01g02249 Bma05g00057 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02249 Bma-Chr1:79661710 Bma05g00650 Bma-Chr5:38183512 1.05E-30 dispersed
Bma01g02249 Bma-Chr1:79661710 Bma05g00057 Bma-Chr5:2394198 1.88E-46 wgd
Bma01g02249 Bma-Chr1:79661710 Bma05g00069 Bma-Chr5:2542258 3.70E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56782 PF07744 SPOC 1.10E-17 CL0616 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02249 K18667 - qsu:112027163 1182.16