Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02343 ATGACCGCCCACCATCGTTTTCAGCACAATAACAAGACAATTATTTTTTCTGGGTTTCCGTTATCCGTCATGGAAGTCGGGGAGAAAGCTAGACAGGCGAAGAAGATGGCCCAGGCCAGCTCCAGAAAGGGTTGCATGAGAGGAAAAGGCGGGCCTGAAAATGCTACGTGTACTTATAAAGGCGTTAGACAGCGAACTTGGGGCAAATGGGTGGCCGAAATTCGCGAGCCTAACCGTGGAGCTCGCCTCTGGCTCGGCACCTTCGATACTTCTCACGAAGCAGCTATGGCCTACGACGCTGCTGCCAGAAAGCTTTACGGATCCGACGCTAAGCTGAACCTTCCTGCAGATTTTCGTAGCTCTAACCAAATAATTATTCAAACGGCGAACCAACCTATCACAGATGAATCCCAGCAAGTGCAAAAGAAAGAGGGAGAGTTTTTGGGAGAGAACATAGACGAGAGGCCGTGGGGGACCTTTGATGAATCCATGTGGACAGAGGCAGCCATGTCTTTAGATTTTCCAGCCATTGAAGAGCATAGACTTTTCTCTACCACCTGGATAGACGAAGCAAATGGATGGGAGACGTTTCAGTATTGCTTATAG 606 49.01 MTAHHRFQHNNKTIIFSGFPLSVMEVGEKARQAKKMAQASSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGSDAKLNLPADFRSSNQIIIQTANQPITDESQQVQKKEGEFLGENIDERPWGTFDESMWTEAAMSLDFPAIEEHRLFSTTWIDEANGWETFQYCL 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81023072 81023677 + Bma003209.1 Bma01g02343 76860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02343 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 33 138 - -
Bma01g02343 201 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Bma01g02343 201 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Bma01g02343 201 CDD AP2 57 117 IPR001471 GO:0003700|GO:0006355
Bma01g02343 201 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Bma01g02343 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 33 138 - -
Bma01g02343 201 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Bma01g02343 201 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Bma01g02343 201 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Bma01g02343 201 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02343 Bma05g00143 CCT
Bma01g02343 Bma04g00223 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02343 Bma-Chr1:81023072 Bma10g00201 Bma-Chr10:1794138 3.70E-35 dispersed
Bma01g02343 Bma-Chr1:81023072 Bma04g00223 Bma-Chr4:1900041 1.89E-88 wgd
Bma01g02343 Bma-Chr1:81023072 Bma05g00143 Bma-Chr5:4315509 1.31E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56795 PF00847 AP2 9.30E-16 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02343 - - cmos:111454192 201.83