Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00898 ATGGCAGTTCAGCAAATGGATGGAGCTGACGGTGATGGAGAGGGAGTGCCGTGCAATTCGATTAATAACGTAGATTCTACTCCGTCTACCTCATCGGGTGAGTGCTGTTTGACGAGCTCAGAGCCAATGTCTCCCATTCTTATTTTCTGGTTCTTCCACAAAGCGATTCGCAATGAGCTTGACGAGCTGCACCGATTGGCTATGGCTTTTGCCACCGCCCGTAGATGCGACATTGGGGTGCTTCGGGAGCGGTACCAGTTCATAAGATCGATATATAAGCACCATTCCAATGCTGAAGACGAGAAAACTCGAGTATTGTTTAACGCTATGCATCATGCAATAAATTCCATAACGCATCATCAATTCAACATGAACTATGTATTTTCAATGCTTATTGAGTATTTCTCTCATGAAGAACAAGCATCTTTGGCCTGGCAGTTTTTATGCAGCATTCCAGTGGTTACGATGGCTGAATTCCTTCCTTGGCTTTCTTCATCTATTTCATCCAATGAAATTCAAGATTTGCACAAGTGTCTAAGAAAAGTAGATTCCTCGGGAAAAACTTCTTCAAACGGTAAATTAACTGCTTTGCTTGCGGAATTCAAGTTTATTTCTGTCTATTTTCTCTATTTTGTTGAGTTAATAAAGGTATTGTTTATTCAGATCATTTTCACATGGATGGGAAGCAAAGATATTGCTAACATCATTGAAAGTTGTGTACATGATTCTCGTGCCTGTGTGGATGTTGTGGCCAAGAAATCAACTCATCAAACAGATGAAGTTAACTCGACACGTGTATCAACAACAACTAGGAAAAGGAAATATTTTTACTCTAGTGCAGACGCTTTTGATAGCATTGATAGACATCCAATTAACGATATATTACTTTGGCTCAATGCTATAAAAAATGAGTGGAAGAAGATATCTCAGGAGGTTGAGAAGATAAAGCTTTCTGGAGGTTTCACAGATATATCAGCATTCAATGAGAGGTTGCAATTCATTATCGAAGTTTGCATTTTTCGCAGTGTTTCTAAGGACAGGCTCATATTTCCTGCAGTAGATGGAGAATTCTCTTTTCTTCGAGAACATGCCCAAAAAAAAAATCAGTTTAATAAGTTCAGATATTTGATGGAAAAAATTAAGAATGTAGGTGAAAATTCTTCTGCATCTGAACTTTACGTCATTCCACTGGCTCGGAAGGTATTCAGCTTTAAAAAACAAAGAGAACTTTTGTATCGAAGCTTGTGTACGATGCCCTTAAAATTGATTGAACGTTTCTTACCATGCTTTATTGGATTATTAACTGATGCTGAAGCCAGAGATTTTCTTAAAAACAAAAAATTGGCAGTCCCTGATATTCAAAGTTTGGAACAGAATGATCAGATGTTCAAACCTGGTTGGAAAGATATTTTTCGGATGAATGAAAAAGAACTTAAATCAGAGATCGATAAGGCTGATCAGGATTTGACTCTTGACCCGAGGAGAAAGACATATCTCGTCGAGAATCTTATGACTGGTCGCTGGATTGCTGCTCAGCAGAAGTTGCTTCAAGCAGAGGGAGAAACTTCCAACAGTGAAGATGTTCCAGGTCGCTCACCTTCATTTCGAGATCCAGAGAGAGAAGTCTTCGGATGTGAACATTACAAAAGAAACTGCAAACTTCTAGCTGCTTGCTGTGGCAAGTTGTTTACTTGTTGGTTTTGTCATGATAATGTCAGCGACCACTCCATGGATAGCAACATCAAAATGATGTGTATGCTCTGTCTCAATGTCCAGCCAGTTGGACCAATATGCATTATGCCTTCTTGCAATGGCTTTTCAATGGGAAAATACTATTGCAATATTTGTAAATTTTTTGATGACGAAAGGAGCGTATATCATTGTCCATTTTGCAACATATGCCGTGTTGGTACTGGTCTTGGGATCGATGTTTTTCATTGTATGACTTGTAATTGCTGCCTTGGTACAAAGGCAGTGAACCACAAATGCCTAGAGAAAAGTTTAGAGATAAATTGCCCCATTTGCTGTGACTTTTTGTTCACCTCCAGTGCAACAGTCAAACCTTTACCTTGTGGGCATTACATGCATTCAGCTTGCTTTCAGGCATACACCTGCAGCCATTACACCTGTCCAATTTGCAGCAAATCATTAGGAGATATGTCCGTTTATTTTGACATGCTCGATGCATTGTTGGCTGCTGAGGAGCTTCCCGAGGAGTACAAGAATCAGACTCAGGACATACTTTGTAACGACTGCAATGAAAAGGGGACGTCGGGATTCCACTGGGTACATCACAAGTGCAGATTTTGCGGCTCTTACAACACTCGCGTAATCAAGAGCGAGAAGAAAAACGTCGGCTGGTGTTCCTCCGCTCAGTGA 2379 40.23 MAVQQMDGADGDGEGVPCNSINNVDSTPSTSSGECCLTSSEPMSPILIFWFFHKAIRNELDELHRLAMAFATARRCDIGVLRERYQFIRSIYKHHSNAEDEKTRVLFNAMHHAINSITHHQFNMNYVFSMLIEYFSHEEQASLAWQFLCSIPVVTMAEFLPWLSSSISSNEIQDLHKCLRKVDSSGKTSSNGKLTALLAEFKFISVYFLYFVELIKVLFIQIIFTWMGSKDIANIIESCVHDSRACVDVVAKKSTHQTDEVNSTRVSTTTRKRKYFYSSADAFDSIDRHPINDILLWLNAIKNEWKKISQEVEKIKLSGGFTDISAFNERLQFIIEVCIFRSVSKDRLIFPAVDGEFSFLREHAQKKNQFNKFRYLMEKIKNVGENSSASELYVIPLARKVFSFKKQRELLYRSLCTMPLKLIERFLPCFIGLLTDAEARDFLKNKKLAVPDIQSLEQNDQMFKPGWKDIFRMNEKELKSEIDKADQDLTLDPRRKTYLVENLMTGRWIAAQQKLLQAEGETSNSEDVPGRSPSFRDPEREVFGCEHYKRNCKLLAACCGKLFTCWFCHDNVSDHSMDSNIKMMCMLCLNVQPVGPICIMPSCNGFSMGKYYCNICKFFDDERSVYHCPFCNICRVGTGLGIDVFHCMTCNCCLGTKAVNHKCLEKSLEINCPICCDFLFTSSATVKPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMSVYFDMLDALLAAEELPEEYKNQTQDILCNDCNEKGTSGFHWVHHKCRFCGSYNTRVIKSEKKNVGWCSSAQ 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8870137 8878308 - Bma017223.1 Bma03g00898 79571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00898 792 SUPERFAMILY Zinc hairpin stack 609 665 IPR037275 -
Bma03g00898 792 ProSiteProfiles Zinc finger CTCHY-type profile. 608 671 IPR017921 -
Bma03g00898 792 SUPERFAMILY RING/U-box 670 720 - -
Bma03g00898 792 Pfam CHY zinc finger 545 618 IPR008913 GO:0008270
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 390 455 - -
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 26 117 - -
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 121 184 - -
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 218 393 - -
Bma03g00898 792 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 455 785 - -
Bma03g00898 792 Gene3D - 742 786 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 390 455 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 218 393 - -
Bma03g00898 792 SMART ring_2 672 713 IPR001841 -
Bma03g00898 792 CDD RING-H2_Pirh2 671 714 - -
Bma03g00898 792 Pfam Zinc-ribbon 719 776 IPR039512 -
Bma03g00898 792 Gene3D nmb1532 protein domain like 44 125 - -
Bma03g00898 792 Pfam Ring finger domain 671 713 IPR001841 -
Bma03g00898 792 CDD Hr-like 52 111 - -
Bma03g00898 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 716 IPR013083 -
Bma03g00898 792 SUPERFAMILY CHY zinc finger-like 538 599 IPR037274 GO:0008270
Bma03g00898 792 MobiDBLite consensus disorder prediction 1 36 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 26 117 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 121 184 - -
Bma03g00898 792 PANTHER CHY ZINC FINGER PROTEIN 455 785 - -
Bma03g00898 792 ProSiteProfiles Zinc finger CHY-type profile. 538 605 IPR008913 GO:0008270
Bma03g00898 792 ProSiteProfiles Zinc finger RING-type profile. 672 714 IPR001841 -
Bma03g00898 792 MobiDBLite consensus disorder prediction 19 36 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00898 Bma12g01234 CCT
Bma03g00898 Bma12g01234 ECH
Bma03g00898 Bma08g00059 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00898 Bma-Chr3:8870137 Bma08g00059 Bma-Chr8:750624 5.98E-08 dispersed
Bma05g01058 Bma-Chr5:49283487 Bma03g00898 Bma-Chr3:8870137 5.26E-48 transposed
Bma01g02148 Bma-Chr1:77978920 Bma03g00898 Bma-Chr3:8870137 8.14E-50 transposed
Bma02g00879 Bma-Chr2:47092353 Bma03g00898 Bma-Chr3:8870137 2.23E-40 transposed
Bma12g01234 Bma-Chr12:45293119 Bma03g00898 Bma-Chr3:8870137 4.00E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00898 K16276 - cpap:110813349 763.837