Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00958 ATGCTGTCAAATGCAGGGACGGCGGAAATCTCTACCACTGGATTTATGCTCCGCCCTGGCGAGGCAAACACCCTTACTGTTCCGACCTCCTGGTCTGGCCGAGTATGGGGTCGGACCCATTGTTCTGAGGACACCTCCGGAAAGTTCTCTTGCATTACTGGAGACTGTGGCTCCAGTGCAGTAGAATGCAAAGGCTCAGGCGCTGCCCCGCCGGTCACTCTTGCAGAGTTCACTCTGAACGGCTATGACGAGCTCGATTTCTACGATGTTAGCCTCGTGGATGGCTACAATCTTCCGATGTTGATCGCGCCAGTTGATGGAGCTACGGGTAACTGTACGAGCACTGGGTGCTTGGCTGAGTTGAACGGCGGTTGTCCGGCGGAGCTGAGAATCATGGGTGCTGACGAGAGTTCGACAGTGGCGTGTAAGAGCGCTTGCATGGCTTTTGGTGAGCCCCAGTACTGCTGCACCGGCGCTTATGCAAATCCAAATACGTGCAAGCCCAGTTATTACTCCATGCTTTTCAAGAATGTGTGTCCTTCGGCTTATAGCTACGCTTTCGACGACGGAACAAGCACTTTCACCTGTGGATCGGCTAACTATGTTATCACTTTCTGCCCCTCCATACCAACCAGGTTTCGTATTTCTTCCCCCATCATCTTCACCGTCTTTGAACTTCTTTGGTTTTTCTTTTCAGGAGCTTCAGGAGCTACCTTCACATTTGTGAACAGGTGCGATTTTACTGTATGGCCGGGAATTCTGGGTAGTCCTAAACTAGATAGTACAGGCTTTGAGCTTCAAAAGGGTCGCTCTCGCTCCTTCCAAGCTCCGACTGGCTGGTCAGGCAGGTTCTGGGGTCGAACCACCTGCAACTTCGACGCCTCTGGCCGCGGCGTCTGCGCTACCGGAGACTGTGGCTCCGGCGAGGTTGAGTGCAACGGCGCCAGCGCTACTCCTCCAGCGACACTGGCTGAGTTTACACTCGGCTTCGGATCGCAGGATTTCTACGACGTTAGCCTCGTCGACGGCTATAACCTGCCTATGATCGTCGAAGGAACCGGCGGGTCGGGTCCGTGTGAAACGACGGGTTGCGTATCAGACCTGAACCGGAAATGTCCGACTGAATTGAGAGCGGAAGGTGGCGGCTCATGTAGAAGTGCGTGCGAGGCATTTGGGAAGCCGGAGTATTGTTGCAGCGGCGCGTATAATACACCTGCTGTTTGTAAACCTTCAATGTATTCGCAGATGTTCAAATCCGCCTGCCCAAAATCATATAGCTACGCTTATGACGATGCCACCAGCACATTTACCTGCACCGGAGCAGATTATACGATCACATTTTGTCCGAGGTAA 1353 53.29 MLSNAGTAEISTTGFMLRPGEANTLTVPTSWSGRVWGRTHCSEDTSGKFSCITGDCGSSAVECKGSGAAPPVTLAEFTLNGYDELDFYDVSLVDGYNLPMLIAPVDGATGNCTSTGCLAELNGGCPAELRIMGADESSTVACKSACMAFGEPQYCCTGAYANPNTCKPSYYSMLFKNVCPSAYSYAFDDGTSTFTCGSANYVITFCPSIPTRFRISSPIIFTVFELLWFFFSGASGATFTFVNRCDFTVWPGILGSPKLDSTGFELQKGRSRSFQAPTGWSGRFWGRTTCNFDASGRGVCATGDCGSGEVECNGASATPPATLAEFTLGFGSQDFYDVSLVDGYNLPMIVEGTGGSGPCETTGCVSDLNRKCPTELRAEGGGSCRSACEAFGKPEYCCSGAYNTPAVCKPSMYSQMFKSACPKSYSYAYDDATSTFTCTGADYTITFCPR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10178704 10189786 - Bma017297.1 Bma03g00958 79631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00958 450 ProSiteProfiles Thaumatin family profile. 11 207 IPR001938 -
Bma03g00958 450 SUPERFAMILY Osmotin, thaumatin-like protein 237 449 IPR037176 -
Bma03g00958 450 SMART tha2 239 449 IPR001938 -
Bma03g00958 450 SMART tha2 2 207 IPR001938 -
Bma03g00958 450 PANTHER OS03G0233200 PROTEIN 225 449 IPR001938 -
Bma03g00958 450 PRINTS Pathogenesis-related protein signature 296 325 IPR001938 -
Bma03g00958 450 PRINTS Pathogenesis-related protein signature 238 250 IPR001938 -
Bma03g00958 450 PRINTS Pathogenesis-related protein signature 262 271 IPR001938 -
Bma03g00958 450 PRINTS Pathogenesis-related protein signature 439 448 IPR001938 -
Bma03g00958 450 PRINTS Pathogenesis-related protein signature 283 294 IPR001938 -
Bma03g00958 450 PRINTS Pathogenesis-related protein signature 334 350 IPR001938 -
Bma03g00958 450 PANTHER OS03G0233200 PROTEIN 1 215 IPR001938 -
Bma03g00958 450 Pfam Thaumatin family 243 449 IPR001938 -
Bma03g00958 450 Pfam Thaumatin family 2 207 IPR001938 -
Bma03g00958 450 Gene3D Thaumatin 1 207 IPR037176 -
Bma03g00958 450 Gene3D Thaumatin 237 449 IPR037176 -
Bma03g00958 450 SUPERFAMILY Osmotin, thaumatin-like protein 6 208 IPR037176 -
Bma03g00958 450 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 1 215 - -
Bma03g00958 450 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 225 449 - -
Bma03g00958 450 CDD TLP-PA 2 206 - -
Bma03g00958 450 CDD TLP-PA 238 448 - -
Bma03g00958 450 ProSitePatterns Thaumatin family signature. 296 312 IPR017949 -
Bma03g00958 450 ProSiteProfiles Thaumatin family profile. 236 450 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00958 Bma06g00093 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00958 Bma-Chr3:10178704 Bma05g00168 Bma-Chr5:4778220 1.05E-79 dispersed
Bma01g00724 Bma-Chr1:6630585 Bma03g00958 Bma-Chr3:10178704 4.69E-38 wgd
Bma03g00958 Bma-Chr3:10178704 Bma06g00093 Bma-Chr6:1413130 1.51E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00958 - - lang:109331061 662.144