Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00223 | GCCATGGAAGTAGGCGAGAGAGCTAGACAAGCGAAGAAGATGGCGCAGGCTAGCTCCAGAAAAGGCTGCATGAGAGGAAAAGGAGGGCCAGAAAACGCTACCTGCACTTACAAAGGCGTGAGGCAACGAACTTGGGGTAAATGGGTAGCCGAAATTCGCGAGCCTAACCGCGGAGCTCGTCTGTGGCTCGGCACCTTCGATACTTCTCACGAAGCAGCTATGGCCTACGACGCTGCCGCAAGAAAGCTCTACGGGCCCGACGCTAAGCTCAATCTTCATGCAGAATTCAGTAGCTCTGCCCAAATGGGAAACCAACCAGTCAAAAACGAATTGCAGCAGGTGGAGAAGGAGGTGCAGTTCTTCGGTGAGAATAATGAAGAAGATTTAAATAGAGGGATGTGGGGGAGCGCCTGTAACTTGAGCTTGGACGAGTCTATGTGGACGGAAGCAGCAATGTCCGTAGACTTTCCAGTCATGGAAGAGCATGGATTCCTCTCTACCGCCTGGATAGATGAAGCAAGTGGGTGGGATGCGTTTCAGTGGTGCTTGTAA | 552 | 52.17 | AMEVGERARQAKKMAQASSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLHAEFSSSAQMGNQPVKNELQQVEKEVQFFGENNEEDLNRGMWGSACNLSLDESMWTEAAMSVDFPVMEEHGFLSTAWIDEASGWDAFQWCL | 183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1900041 | 1900592 | + | Bma018674.1 | Bma04g00223 | 80592 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00223 | 183 | Pfam | AP2 domain | 36 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Bma04g00223 | 183 | PRINTS | Ethylene responsive element binding protein signature | 59 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Bma04g00223 | 183 | PRINTS | Ethylene responsive element binding protein signature | 37 | 48 | IPR001471 | GO:0003700|GO:0006355 | |
Bma04g00223 | 183 | CDD | AP2 | 35 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Bma04g00223 | 183 | Gene3D | AP2/ERF domain | 36 | 94 | IPR036955 | GO:0003700|GO:0006355 | |
Bma04g00223 | 183 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 123 | 176 | - | - | |
Bma04g00223 | 183 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 11 | 113 | - | - | |
Bma04g00223 | 183 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Bma04g00223 | 183 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 123 | 176 | - | - | |
Bma04g00223 | 183 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 11 | 113 | - | - | |
Bma04g00223 | 183 | SUPERFAMILY | DNA-binding domain | 36 | 94 | IPR016177 | GO:0003677 | |
Bma04g00223 | 183 | SMART | rav1_2 | 36 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Bma04g00223 | 183 | ProSiteProfiles | AP2/ERF domain profile. | 36 | 93 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma04g00223 | Bma05g00143 | CCT | |
Bma01g02343 | Bma04g00223 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00223 | Bma-Chr4:1900041 | Bma08g01076 | Bma-Chr8:49798943 | 2.97E-27 | dispersed | |
Bma10g00201 | Bma-Chr10:1794138 | Bma04g00223 | Bma-Chr4:1900041 | 2.89E-29 | transposed | |
Bma01g02343 | Bma-Chr1:81023072 | Bma04g00223 | Bma-Chr4:1900041 | 1.89E-88 | wgd | |
Bma04g00223 | Bma-Chr4:1900041 | Bma05g00143 | Bma-Chr5:4315509 | 5.38E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57123 | PF00847 | AP2 | 5.70E-16 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00223 | - | - | cmos:111454192 | 212.231 |