Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00223 GCCATGGAAGTAGGCGAGAGAGCTAGACAAGCGAAGAAGATGGCGCAGGCTAGCTCCAGAAAAGGCTGCATGAGAGGAAAAGGAGGGCCAGAAAACGCTACCTGCACTTACAAAGGCGTGAGGCAACGAACTTGGGGTAAATGGGTAGCCGAAATTCGCGAGCCTAACCGCGGAGCTCGTCTGTGGCTCGGCACCTTCGATACTTCTCACGAAGCAGCTATGGCCTACGACGCTGCCGCAAGAAAGCTCTACGGGCCCGACGCTAAGCTCAATCTTCATGCAGAATTCAGTAGCTCTGCCCAAATGGGAAACCAACCAGTCAAAAACGAATTGCAGCAGGTGGAGAAGGAGGTGCAGTTCTTCGGTGAGAATAATGAAGAAGATTTAAATAGAGGGATGTGGGGGAGCGCCTGTAACTTGAGCTTGGACGAGTCTATGTGGACGGAAGCAGCAATGTCCGTAGACTTTCCAGTCATGGAAGAGCATGGATTCCTCTCTACCGCCTGGATAGATGAAGCAAGTGGGTGGGATGCGTTTCAGTGGTGCTTGTAA 552 52.17 AMEVGERARQAKKMAQASSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLHAEFSSSAQMGNQPVKNELQQVEKEVQFFGENNEEDLNRGMWGSACNLSLDESMWTEAAMSVDFPVMEEHGFLSTAWIDEASGWDAFQWCL 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1900041 1900592 + Bma018674.1 Bma04g00223 80592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00223 183 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Bma04g00223 183 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Bma04g00223 183 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Bma04g00223 183 CDD AP2 35 91 IPR001471 GO:0003700|GO:0006355
Bma04g00223 183 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Bma04g00223 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 123 176 - -
Bma04g00223 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 11 113 - -
Bma04g00223 183 MobiDBLite consensus disorder prediction 1 28 - -
Bma04g00223 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 123 176 - -
Bma04g00223 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 113 - -
Bma04g00223 183 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Bma04g00223 183 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Bma04g00223 183 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00223 Bma05g00143 CCT
Bma01g02343 Bma04g00223 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00223 Bma-Chr4:1900041 Bma08g01076 Bma-Chr8:49798943 2.97E-27 dispersed
Bma10g00201 Bma-Chr10:1794138 Bma04g00223 Bma-Chr4:1900041 2.89E-29 transposed
Bma01g02343 Bma-Chr1:81023072 Bma04g00223 Bma-Chr4:1900041 1.89E-88 wgd
Bma04g00223 Bma-Chr4:1900041 Bma05g00143 Bma-Chr5:4315509 5.38E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57123 PF00847 AP2 5.70E-16 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00223 - - cmos:111454192 212.231