Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma04g00242 | ATGGAAGTTGAAGAAAATCATCGAAAACAAAAAAAACATCAATCGTCGTTCAAGTCAAGATTCAGACGTGTCTGCGTTTTCTGCGGTAGCAGCCCTGGAAAGAACCATAGCTACCAAGTCGCAGCTATTCAACTTGGCAAACAACTGGTGGAGAGGAAAATAGACTTGGTTTACGGAGGAGGGAGCATAGGTCTAATGGGTTTAGTTTCTAAAGCCGTCTACGACGGAGGTCGTCATGTTATAGGAGTGATTCCGAGGACTCTCATGCCCAGAGAGCTAACCGGAGAAACAATCGGAGAAGTGAGAGCAGTATCCGGGATGCACCAGAGAAAAGCCGAGATGGCCCGGCAAGCCGATGCCTTCATTGCATTGCCAGGTGGATATGGAACTTTAGAAGAACTCTTGGAAGTCATCACTTGGGCTCAACTGGGAATCCACGATAAACCCGTGGGGCTTCTGAACGTCGATGGATACTACAATTCATTTCTGTCGTTCCTGGACAAAGCAGTGGAAGAAGGATTCATCACCCCAGCTGCCCGAAACATCACTGTCTCTGCCCAAACTGCCCATGAGCTCATCTCCAAGCTCGAGGATTTTGTTCCCAGGCCTTCAGCGGCGGCCACCAAACTCCGGTGGGAGATGGATCAACATCTGGGTTACTCGGAAAAATCAGATATTGCTCGTTAA | 687 | 48.62 | MEVEENHRKQKKHQSSFKSRFRRVCVFCGSSPGKNHSYQVAAIQLGKQLVERKIDLVYGGGSIGLMGLVSKAVYDGGRHVIGVIPRTLMPRELTGETIGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSFLSFLDKAVEEGFITPAARNITVSAQTAHELISKLEDFVPRPSAAATKLRWEMDQHLGYSEKSDIAR | 228 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2091144 | 2092360 | + | Bma018694.1 | Bma04g00242 | 80611 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma04g00242 | 228 | TIGRFAM | TIGR00730: TIGR00730 family protein | 23 | 198 | IPR005269 | GO:0009691|GO:0016787 | |
| Bma04g00242 | 228 | PANTHER | CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE | 13 | 225 | - | - | |
| Bma04g00242 | 228 | SUPERFAMILY | MCP/YpsA-like | 20 | 199 | - | - | |
| Bma04g00242 | 228 | Pfam | Possible lysine decarboxylase | 66 | 195 | IPR031100 | - | |
| Bma04g00242 | 228 | Gene3D | - | 9 | 198 | - | - | |
| Bma04g00242 | 228 | PANTHER | LOG FAMILY PROTEIN YJL055W | 13 | 225 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma01g00729 | Bma04g00242 | CCT | |
| Bma01g02363 | Bma04g00242 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g01924 | Bma-Chr1:71026540 | Bma04g00242 | Bma-Chr4:2091144 | 4.59E-44 | dispersed | |
| Bma04g00242 | Bma-Chr4:2091144 | Bma11g00179 | Bma-Chr11:1610589 | 2.06E-121 | dispersed | |
| Bma14g00309 | Bma-Chr14:3860998 | Bma04g00242 | Bma-Chr4:2091144 | 2.17E-09 | dispersed | |
| Bma01g02363 | Bma-Chr1:81321365 | Bma04g00242 | Bma-Chr4:2091144 | 4.93E-145 | wgd | |
| Bma01g00729 | Bma-Chr1:6668243 | Bma04g00242 | Bma-Chr4:2091144 | 3.96E-135 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma04g00242 | K22522 | - | jre:109021804 | 373.244 |