Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00428 ATGCCGCATAGAACTACTTACTTCTTTCCCAGGCAATTTTCTGATCACGGATTGGAACCTGCGTCGACTTCTAAACAGAAATTAGACCACGAGGAGCATATTAAAGAATATACGCGTGGCGTCGAAAGCGACTCAAAGTCGATCCCGCGGCTCCCCCGCGAAATAACGTTCACGAAGTTTTCTGCTTTGTCAAATATTTTCACGGGGAACAAGAAAGTGGCACGATCTGCATCTACTCACGTGAAGACCTGGCTTTCAAAACGCGACGACGGACGGGAGATACTTCTGTCATCGACGTTGGAGGCGGAGTCGGAGGCGGAGGCGGAGCCGGTGTTGGCTAAAGTTAGGAATGGTGACCACATCTTTGAGCGTCAAGTTTCATTGTCCGGGCTATCAAGCGGGAGTAGTTATGCTGGAAGTTTCTTTTCCGACGCTGGAATGGAGGCGATAGCCCGAAATGTTAAGGATTCAAGGGGATCGAAGATTTCGTATCTTTTACCTATTGAGAAACGGGAGGTGGTGTTGGAGGAGGAGAGCAGGGAAAACTTGTCACAGAAGATCAAAGAAAGTTACTATCTACAACTTACTTTGGCAAAAAGGCTTACTTTCCAGGCAAATATTTGTAGTGAGCCCCTGTTTATAGAAGAGAGTAGAGAGGACGTTACGGATGTTGAAACTGTTTCTTATCGACTTTGGGTGAGTGGTTGCTTGTCTTACTCTGACAAGATATCAGATGGGTTCTACAACATTTTAGGCATGAATCCATATCTCTGGCTGATGTGCAGTGATGTTGAGGAAGGTAGGCGGCTGCCTCCTCTTATGTCGCTTAAAGCAGTTGAACCTAGTGAGACTTCAATGGAGGTGGTCCTTGTCGATAGGCATGGGGACTCGCGCCTTAAAGAGCTCGAAGATAAAGCACAACAGTTATATTATTCTTCAGATAACACCCTGGTGTTCATAAAAAATTTGGGAAAACTGGTTGCCGCCTTTATGGGCGGAACTTTTCCAATGGAGCAAGGAGATCTTCAGTTGCACTGGAAAGTAGTGAGTAAGAGATTGAGGGAAAATCAGAATTGCATAGTGCTTCCACTGGGCAGTTTATCTATGGGACTATGCAGGCATCGTGCAATCCTTTTTAAGAAACTAGCAGATTATGTTGGTTTGCCATGTCGCATAGCTCGAGGTTGCAAGTACTGTTCAGCAGATCATCAGTCTTCTTGTTTGGTTAAAATTGAAGAGGACAGAAACAGGGAATATGTAGTTGACCTTGTTGGCAAACCAGGACATATACATTGTCCAGATTCTTCAATTAATGGTTGTTCGTCCTCGGTGCCTTCACCATATCAAATTTCTCATGTAAAAGAACAACAACCTTACGTGTGTTTTTATATCTTATTTTTTTTTACTTTTTATAACCATACATCACCAAATATGTACCCGAAATTGATATGTAGATATAAAACTCCCGTAGGGTCCGGAGAAGGTGGTTACCAGATGAAGGAAAGCTGTTCATGTGATGAATCTGTTGATCAATCTTGTATAGGAATGCAATTATCTCCTATATGTTTTGATACGAAAGCCATTGCTGGACATTGTTTGGATCAGTGTCCAGAGTCGCAGTTTCCTGAGGAAAATGTTGCTGAATTACTGGGTGCTGCTAATGGGGTATGTTTACATGAAAAGTGTTCGAGGCTGGTGGAAAACGAAGTTGCGCAAGCATACGTAAAAGAAAGAGTCGCATTAGGAAAAATGTCGACAGATAACAGTATTAAACAACCTAAACTAAGTGTTGTCAGTCTATCCGATCAGAAGAAGATCAAAAGTAATTCTGTAGACCAAGGTAGATTCCCTGCTCCAACTAACCCAAGATATTTAAATCTTGAACCATCTCTTGCCATGGATTGGCTTGAGATCTCGTGGGATGATTTGCATATCAAAGAGCGTGTTGGAGCTGGCTCGTTCGGTACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACTGTGCAGGATTTCCAGGATGATCAGTTGAAGGAGTTTTTAAGAGAGGTAGCAATAATGAAGCGAGTTCGCCATCCAAATGTGGTTCTCTTTATGGGTGCAGTAACAAAGCGTCCTCATCTGTCGATAGTGACTGAATATCTGCCAAGGGGTAGTCTATATCGCCTGATCCATAGACCAGCTTCTAGTGAAATACTGGACCAGAGGAGACGGTTGCGCATGGCATTGGATGTGGCCAAGGGAATCAATTATCTACACTCCCTTTCTCCTCCTATAGTTCATTGGGATCTTAAATCTCCAAATTTGTTGGTAGACAAAAATTGGACTGTGAAGGTGTGCGATTTTGGCTTGTCCAGATTCAAAGCAAACACTTTTATATCGTCAAAGTCCGTAGCTGGAACACCTGAGTGGATGGCTCCCGAATTTCTTCGGTGTGAGCCTTCGAATGAAAAATCTGATGTATACAGTTTCGGTGTGATTCTTTGGGAGCTTGTTACGATGCAGCAACCCTGGAATGAACTCGGTCCTGCGCAAGTTGTTGGAGCTGTCGCTTTTCAAAATAGAAGACTTACTATCCCTCATAACACTTCCCCGTTGTTAGCTTCACTTATCGAAACTTGCTGGGCTGATGATCCTATTCGCCGCCCGTCTTTCAGAAGCATAGTGGACTCACTAAAGAAGCTACTCAAGTCTCCGCAGCAGTTGATAGTGATGGGAGGGACGTAG 2742 43.84 MPHRTTYFFPRQFSDHGLEPASTSKQKLDHEEHIKEYTRGVESDSKSIPRLPREITFTKFSALSNIFTGNKKVARSASTHVKTWLSKRDDGREILLSSTLEAESEAEAEPVLAKVRNGDHIFERQVSLSGLSSGSSYAGSFFSDAGMEAIARNVKDSRGSKISYLLPIEKREVVLEEESRENLSQKIKESYYLQLTLAKRLTFQANICSEPLFIEESREDVTDVETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWLMCSDVEEGRRLPPLMSLKAVEPSETSMEVVLVDRHGDSRLKELEDKAQQLYYSSDNTLVFIKNLGKLVAAFMGGTFPMEQGDLQLHWKVVSKRLRENQNCIVLPLGSLSMGLCRHRAILFKKLADYVGLPCRIARGCKYCSADHQSSCLVKIEEDRNREYVVDLVGKPGHIHCPDSSINGCSSSVPSPYQISHVKEQQPYVCFYILFFFTFYNHTSPNMYPKLICRYKTPVGSGEGGYQMKESCSCDESVDQSCIGMQLSPICFDTKAIAGHCLDQCPESQFPEENVAELLGAANGVCLHEKCSRLVENEVAQAYVKERVALGKMSTDNSIKQPKLSVVSLSDQKKIKSNSVDQGRFPAPTNPRYLNLEPSLAMDWLEISWDDLHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPASSEILDQRRRLRMALDVAKGINYLHSLSPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRCEPSNEKSDVYSFGVILWELVTMQQPWNELGPAQVVGAVAFQNRRLTIPHNTSPLLASLIETCWADDPIRRPSFRSIVDSLKKLLKSPQQLIVMGGT 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3515283 3521541 + Bma018895.1 Bma04g00428 80797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00428 913 CDD STKc_MAP3K-like 649 897 - -
Bma04g00428 913 SMART serkin_6 643 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00428 913 PRINTS Tyrosine kinase catalytic domain signature 868 890 IPR001245 GO:0004672|GO:0006468
Bma04g00428 913 PRINTS Tyrosine kinase catalytic domain signature 758 776 IPR001245 GO:0004672|GO:0006468
Bma04g00428 913 PRINTS Tyrosine kinase catalytic domain signature 824 846 IPR001245 GO:0004672|GO:0006468
Bma04g00428 913 PRINTS Tyrosine kinase catalytic domain signature 717 730 IPR001245 GO:0004672|GO:0006468
Bma04g00428 913 ProSiteProfiles Protein kinase domain profile. 643 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00428 913 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 106 911 - -
Bma04g00428 913 SUPERFAMILY Protein kinase-like (PK-like) 619 896 IPR011009 -
Bma04g00428 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Bma04g00428 913 Gene3D Phosphorylase Kinase; domain 1 636 720 - -
Bma04g00428 913 Pfam Ethylene-responsive protein kinase Le-CTR1 224 430 - -
Bma04g00428 913 ProSitePatterns Protein kinases ATP-binding region signature. 649 670 IPR017441 GO:0005524
Bma04g00428 913 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 106 911 - -
Bma04g00428 913 Pfam Protein tyrosine and serine/threonine kinase 643 897 IPR001245 GO:0004672|GO:0006468
Bma04g00428 913 Gene3D Transferase(Phosphotransferase) domain 1 722 909 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00729 Bma04g00428 CCT
Bma01g00729 Bma04g00428 ECH
Bma01g02581 Bma04g00428 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00428 Bma-Chr4:3515283 Bma04g01600 Bma-Chr4:51913916 3.30E-144 dispersed
Bma04g01688 Bma-Chr4:53102334 Bma04g00428 Bma-Chr4:3515283 3.69E-42 transposed
Bma06g00066 Bma-Chr6:1049558 Bma04g00428 Bma-Chr4:3515283 1.12E-35 transposed
Bma01g02581 Bma-Chr1:83432251 Bma04g00428 Bma-Chr4:3515283 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66441 PF07714 PK_Tyr_Ser-Thr 1.90E-64 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00428 - - csv:101204522 1147.5