Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01161 ATGGCGTTGTCGGTCGAGAAAACCAGAGCAGGCCGTGAGTACAAGGTCAAGGACATGTCTCAGGCTGACTTTGGTCGTCTCGAGATTGAACTCGCCGAGGTTGAGATGCCGGGTCTCATGTCTTGCCGCTCCGAATTCGGCCCTTCTCAGCCCTTCAAAGGTGCCAGGATCACTGGCTCTCTCCACATGACCATTCAGACCGCCGTTCTCATTGAGACACTCACCGCCCTCGGCGCCGAGGTCCGCTGGTGCTCCTGCAACATCTTCTCTACCCAGGACCACGCCGCCGCCGCTATTGCTCGTGATAGCGCCGCCGTGTTCGCCTGGAAGGGGGAGACGCTCCAGGAGTACTGGTGGTGTACTGAGCGGGCTTTGGATTGGGGTCCCGGTGGTGGTCCCGATCTGATTGTGGACGATGGTGGTGACGCTACGCTTTTGATTCACGAGGGAGTTAAGGCCGAGGAGATCTATGAGAAGTCTGGGCAGCTTCCCGATCCCACTTCTACTGACAATGTAGAGTTCCAACTTGTCTTGACGATCATCAGAGATGGGCTCAAGACTGATCCCAAGAGGTACCACAAGATGAAGGATAGATTGGTTGGGGTCTCAGAAGAGACTACTACTGGGGTGAAGAGGCTTTACCAGATGCAGAACATTGGCACCTTGTTATTCCCTGCTATTAATGTCAACGATTCTGTCACCAAGAGCAAGTTCGATAACTTGTATGGATGCCGCCACTCCCTTCCAGACGGGCTGATGAGGGCGACTGACGTCATGATTGCTGGAAAGGTAGCTGTGGTCTGTGGTTATGGAGATGTTGGCAAGGGCTGCGCGGCTGCCCTCAAGCAAGCTGGAGCTCGTGTAATCGTCACAGAAATTGACCCAATTTGTGCCCTTCAGGCTCTTATGGAAGGCCTTCCAATCCTTACATTAGAAGACGTAGTAGCTGAGGCAGACATTTTTGTTACTACCACCGGAAACAAAGACATCATCATGGTAGACCACATGAAGAAAATGAAGAACAATGCCATTGTTTGCAACATTGGCCACTTTGATAATGAAATTGATATGCATGGGCTGGAGACTTACCCTGGTGTAAAGCGCATTACAATCAAGCCTCAAACCGACAGGTGGGTCTTCCCCGAAACGAACACAGGCATCATTGTATTGGCGGAGGGACGTCTCATGAACTTGGGTTGTGCCACAGGCCACCCTAGTTTTGTGATGTCGTGCTCTTTCACAAACCAGGTGATTGCCCAGCTCGAGCTATGGAAAGAGAAGGGAAGCGGAAAGTACGAGAAGAAGGTCTATGTTTTGCCGAAGCACCTTGATGAGAAAGTGGCTGCTCTTCACCTTGCCAAGCTCGGAGCCAAGCTCACCAAGCTGTCCAAAGATCAGGCGGACTACATCAGCGTGCCTGTGGAAGGGCCATACAAGCCTGCCCATTACCGATACTGA 1458 52.26 MALSVEKTRAGREYKVKDMSQADFGRLEIELAEVEMPGLMSCRSEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKSGQLPDPTSTDNVEFQLVLTIIRDGLKTDPKRYHKMKDRLVGVSEETTTGVKRLYQMQNIGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLPILTLEDVVAEADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMHGLETYPGVKRITIKPQTDRWVFPETNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKGSGKYEKKVYVLPKHLDEKVAALHLAKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29994211 29995970 - Bma019896.1 Bma04g01161 81530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01161 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 379 485 - -
Bma04g01161 485 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 477 IPR000043 -
Bma04g01161 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 242 - -
Bma04g01161 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 - -
Bma04g01161 485 SMART AdoHcyase_NAD_2 240 403 IPR015878 -
Bma04g01161 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 1. 85 99 IPR020082 -
Bma04g01161 485 CDD SAHH 23 473 IPR000043 -
Bma04g01161 485 TIGRFAM ahcY: adenosylhomocysteinase 14 477 IPR000043 -
Bma04g01161 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 240 403 IPR036291 -
Bma04g01161 485 Gene3D - 243 404 - -
Bma04g01161 485 PIRSF SAHH 2 485 IPR000043 -
Bma04g01161 485 Pfam S-adenosyl-L-homocysteine hydrolase 13 484 IPR000043 -
Bma04g01161 485 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 240 403 IPR015878 -
Bma04g01161 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 IPR000043 -
Bma04g01161 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 262 279 IPR020082 -
Bma04g01161 485 SMART AdoHcyase_2 13 484 IPR000043 -
Bma04g01161 485 Gene3D - 15 485 IPR042172 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01161 Bma06g01269 CCT
Bma02g00942 Bma04g01161 CCT
Bma02g00942 Bma04g01161 ECH
Bma04g01161 Bma05g01300 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01197 Bma-Chr2:54069584 Bma04g01161 Bma-Chr4:29994211 0 dispersed
Bma06g01269 Bma-Chr6:49798578 Bma04g01161 Bma-Chr4:29994211 0 transposed
Bma04g01161 Bma-Chr4:29994211 Bma05g01300 Bma-Chr5:52315544 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01161 K01251 - mnt:21409482 927.546