Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00057 | ATGGAGTCTTTGGGTGTTTTCCCTGACGGAGAATGGGGCTCTTTCAGTGCAATTTTCAACTCTGATGAGCTCGAAATGCCTCGTTTTCTCAGACACTTTTCTTCGCCGGAAAGTTATGATGCCGGCGTCAGCTCTCCGCCGCCGATTTGCATTGATTCTCCGGCGAATATAGGTATTAGTGGGGCTAACAAGAGCTGGTTTTATTCTCTAGACGCTTTGAATACTGATTTTAACTTGACCAAACAAGATTATAGCTATAGTTATATTTCCTCTCTCGCTCCCCAACCAAATGATATTTCTTTGTTCATTGATATGGATTCTGTGGGTGAGAGAAAGGCTGGCTCTTTTTTGCCATCTTTAACTGATGTTTTAGAGGAAGATCATCATCAAGCTTTTTGTATCCATGGAGATATGGGTGGTGATGGATATGAGAATTTAGACTACAATCACCCAACGTCGACTGCCATTAATTCCAGCAACGAAGAAGAAGGACTCAAAAGGAAACTTAATGGTGGAGTGCTGAATACACACTTATCTGACAACCCAAAGAAGAAAACTCGAGTCACTCAGCAAGTAAGATCAAAGTTTAAAGATCAAAATCACATTTTTTTGTACGGCAATGGAGGATCTGAAGGACAGAGCTCTAGCAGTTGCAGTACATCCGAAGATAATGCTTCACAGGAAACTAATGGTGGCGCAATTTCAGACTCTAAAAGGTGCGAAGTTCTCAACTCAAATGGAAAGACCAGAGCTGAAAGAGGATCAGCAACTGATCCACAGAGTCTCTACGCAAGAAAACGAAGAGAGAGAATAAATGAGAGACTCAGAATCTTGCAGAAACTCGTTCCCAATGGCACAAAGGTCGATATCAGCACCATGCTTGAAGAGGCAGTCCACTACGTGAAGTTTCTGCAGATGCAAATCAAGCTCTTAAGCTCTGACGATCATTGGATGTATGCTCCAATCGCTTACAATGGAATGGACATTGGTCTACACCAGAAGATTTCTCCAATCCTCTTCCGTTGA | 1026 | 42.4 | MESLGVFPDGEWGSFSAIFNSDELEMPRFLRHFSSPESYDAGVSSPPPICIDSPANIGISGANKSWFYSLDALNTDFNLTKQDYSYSYISSLAPQPNDISLFIDMDSVGERKAGSFLPSLTDVLEEDHHQAFCIHGDMGGDGYENLDYNHPTSTAINSSNEEEGLKRKLNGGVLNTHLSDNPKKKTRVTQQVRSKFKDQNHIFLYGNGGSEGQSSSSCSTSEDNASQETNGGAISDSKRCEVLNSNGKTRAERGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQMQIKLLSSDDHWMYAPIAYNGMDIGLHQKISPILFR | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2394198 | 2395623 | + | Bma020746.1 | Bma05g00057 | 82141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00057 | 341 | CDD | bHLH_AtIND_like | 256 | 318 | - | - | |
Bma05g00057 | 341 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 4 | 337 | - | - | |
Bma05g00057 | 341 | SMART | finulus | 261 | 310 | IPR011598 | GO:0046983 | |
Bma05g00057 | 341 | PANTHER | TRANSCRIPTION FACTOR BHLH54 | 4 | 337 | - | - | |
Bma05g00057 | 341 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 255 | 304 | IPR011598 | GO:0046983 | |
Bma05g00057 | 341 | Gene3D | - | 256 | 316 | IPR036638 | GO:0046983 | |
Bma05g00057 | 341 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 255 | 321 | IPR036638 | GO:0046983 | |
Bma05g00057 | 341 | Pfam | Helix-loop-helix DNA-binding domain | 265 | 305 | IPR011598 | GO:0046983 | |
Bma05g00057 | 341 | MobiDBLite | consensus disorder prediction | 203 | 239 | - | - | |
Bma05g00057 | 341 | MobiDBLite | consensus disorder prediction | 206 | 239 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02249 | Bma05g00057 | CCT | |
Bma01g02249 | Bma05g00057 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g00057 | Bma-Chr5:2394198 | Bma05g00069 | Bma-Chr5:2542258 | 0 | dispersed | |
Bma10g00756 | Bma-Chr10:12002439 | Bma05g00057 | Bma-Chr5:2394198 | 2.60E-18 | dispersed | |
Bma14g00384 | Bma-Chr14:4596578 | Bma05g00057 | Bma-Chr5:2394198 | 1.14E-06 | dispersed | |
Bma15g00345 | Bma-Chr15:3390686 | Bma05g00057 | Bma-Chr5:2394198 | 2.78E-17 | dispersed | |
Bma01g02249 | Bma-Chr1:79661710 | Bma05g00057 | Bma-Chr5:2394198 | 1.88E-46 | wgd | |
Bma04g00160 | Bma-Chr4:1391143 | Bma05g00057 | Bma-Chr5:2394198 | 1.79E-18 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57285 | PF00010 | HLH | 1.00E-08 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00057 | - | - | zju:107433661 | 262.307 |