Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00057 ATGGAGTCTTTGGGTGTTTTCCCTGACGGAGAATGGGGCTCTTTCAGTGCAATTTTCAACTCTGATGAGCTCGAAATGCCTCGTTTTCTCAGACACTTTTCTTCGCCGGAAAGTTATGATGCCGGCGTCAGCTCTCCGCCGCCGATTTGCATTGATTCTCCGGCGAATATAGGTATTAGTGGGGCTAACAAGAGCTGGTTTTATTCTCTAGACGCTTTGAATACTGATTTTAACTTGACCAAACAAGATTATAGCTATAGTTATATTTCCTCTCTCGCTCCCCAACCAAATGATATTTCTTTGTTCATTGATATGGATTCTGTGGGTGAGAGAAAGGCTGGCTCTTTTTTGCCATCTTTAACTGATGTTTTAGAGGAAGATCATCATCAAGCTTTTTGTATCCATGGAGATATGGGTGGTGATGGATATGAGAATTTAGACTACAATCACCCAACGTCGACTGCCATTAATTCCAGCAACGAAGAAGAAGGACTCAAAAGGAAACTTAATGGTGGAGTGCTGAATACACACTTATCTGACAACCCAAAGAAGAAAACTCGAGTCACTCAGCAAGTAAGATCAAAGTTTAAAGATCAAAATCACATTTTTTTGTACGGCAATGGAGGATCTGAAGGACAGAGCTCTAGCAGTTGCAGTACATCCGAAGATAATGCTTCACAGGAAACTAATGGTGGCGCAATTTCAGACTCTAAAAGGTGCGAAGTTCTCAACTCAAATGGAAAGACCAGAGCTGAAAGAGGATCAGCAACTGATCCACAGAGTCTCTACGCAAGAAAACGAAGAGAGAGAATAAATGAGAGACTCAGAATCTTGCAGAAACTCGTTCCCAATGGCACAAAGGTCGATATCAGCACCATGCTTGAAGAGGCAGTCCACTACGTGAAGTTTCTGCAGATGCAAATCAAGCTCTTAAGCTCTGACGATCATTGGATGTATGCTCCAATCGCTTACAATGGAATGGACATTGGTCTACACCAGAAGATTTCTCCAATCCTCTTCCGTTGA 1026 42.4 MESLGVFPDGEWGSFSAIFNSDELEMPRFLRHFSSPESYDAGVSSPPPICIDSPANIGISGANKSWFYSLDALNTDFNLTKQDYSYSYISSLAPQPNDISLFIDMDSVGERKAGSFLPSLTDVLEEDHHQAFCIHGDMGGDGYENLDYNHPTSTAINSSNEEEGLKRKLNGGVLNTHLSDNPKKKTRVTQQVRSKFKDQNHIFLYGNGGSEGQSSSSCSTSEDNASQETNGGAISDSKRCEVLNSNGKTRAERGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQMQIKLLSSDDHWMYAPIAYNGMDIGLHQKISPILFR 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2394198 2395623 + Bma020746.1 Bma05g00057 82141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00057 341 CDD bHLH_AtIND_like 256 318 - -
Bma05g00057 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 337 - -
Bma05g00057 341 SMART finulus 261 310 IPR011598 GO:0046983
Bma05g00057 341 PANTHER TRANSCRIPTION FACTOR BHLH54 4 337 - -
Bma05g00057 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
Bma05g00057 341 Gene3D - 256 316 IPR036638 GO:0046983
Bma05g00057 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 321 IPR036638 GO:0046983
Bma05g00057 341 Pfam Helix-loop-helix DNA-binding domain 265 305 IPR011598 GO:0046983
Bma05g00057 341 MobiDBLite consensus disorder prediction 203 239 - -
Bma05g00057 341 MobiDBLite consensus disorder prediction 206 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02249 Bma05g00057 CCT
Bma01g02249 Bma05g00057 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00057 Bma-Chr5:2394198 Bma05g00069 Bma-Chr5:2542258 0 dispersed
Bma10g00756 Bma-Chr10:12002439 Bma05g00057 Bma-Chr5:2394198 2.60E-18 dispersed
Bma14g00384 Bma-Chr14:4596578 Bma05g00057 Bma-Chr5:2394198 1.14E-06 dispersed
Bma15g00345 Bma-Chr15:3390686 Bma05g00057 Bma-Chr5:2394198 2.78E-17 dispersed
Bma01g02249 Bma-Chr1:79661710 Bma05g00057 Bma-Chr5:2394198 1.88E-46 wgd
Bma04g00160 Bma-Chr4:1391143 Bma05g00057 Bma-Chr5:2394198 1.79E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57285 PF00010 HLH 1.00E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00057 - - zju:107433661 262.307