Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00143 ATGGATGTGGGTGGGAATAGGCATCAGGTGAAGAAGGTGAAGCCTGCGCAGGGTAGTTCTAGGAAAGGTTGCATGAGAGGCAAGGGCGGGCCTGAAAATGCGGCCTGCGCTTACAAAGGCGTCCGGCAGAGAACTTGGGGCAAATGGGTCGCTGAAATACGCGAACCCAATAGAGGAAATCGCCTCTGGTTAGGCACGTTTGACACTTCTCATGAAGCAGCTGTGGCCTACGATGCTGCCGCTCGTAAACTCTACGGCTCCAATGCAAAGCTGAATTTGCCTGATCTGTGCCTTACCCATCATTATCCACTCCATTCTGCGGATACCCAGATGAGCCAAATAGACTTCCAGCCCCAGTTATTGCTTGATTCAGACGCTGCTGCTTCTTCTACTTCAGTCTACGATGGCGGCTCTATCTCGTCTTCTTGTTATGAAAAGGGCGATTCTTGTGGAGACAACGTTGGCAATTGTGGCAAGCAACTCGGTGAAGGGATTGAAGGGCTATGGCGGAGCATGAGCTTGAGCTTTGACGACTCCTTGTGGGCAGAAGCTGCAATGTCTTTGAACTTTCCAGTAATGGAAGACGATGGGAGAGGGTTGGACAGTTTACAGTATTGGTGCATGTAA 627 50.72 MDVGGNRHQVKKVKPAQGSSRKGCMRGKGGPENAACAYKGVRQRTWGKWVAEIREPNRGNRLWLGTFDTSHEAAVAYDAAARKLYGSNAKLNLPDLCLTHHYPLHSADTQMSQIDFQPQLLLDSDAAASSTSVYDGGSISSSCYEKGDSCGDNVGNCGKQLGEGIEGLWRSMSLSFDDSLWAEAAMSLNFPVMEDDGRGLDSLQYWCM 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4315509 4316135 + Bma020853.1 Bma05g00143 82227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00143 208 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE 5 198 - -
Bma05g00143 208 MobiDBLite consensus disorder prediction 1 30 - -
Bma05g00143 208 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Bma05g00143 208 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 198 - -
Bma05g00143 208 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02343 Bma05g00143 CCT
Bma04g00223 Bma05g00143 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00143 Bma-Chr5:4315509 Bma10g00201 Bma-Chr10:1794138 8.84E-35 dispersed
Bma08g01076 Bma-Chr8:49798943 Bma05g00143 Bma-Chr5:4315509 2.23E-35 transposed
Bma01g02343 Bma-Chr1:81023072 Bma05g00143 Bma-Chr5:4315509 1.31E-51 wgd
Bma04g00223 Bma-Chr4:1900041 Bma05g00143 Bma-Chr5:4315509 5.38E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57298 PF00847 AP2 2.50E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00143 - - tcc:18591467 232.261