Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01300 ATGGCGTTGTCGGTCGAGAAAACCACCGCAGGCCGCGAATACAAGGTCAAGGACATGTCTCAGGCTGACTTCGGCCGTCTCGAGATCGAACTCGCCGAGGTCGAGATGCCTGGCCTTATGTCTTGCCGCTCTGAATTTGGCCCTTCTCAGCCCTTTAAGGGAGCCAAGATCACTGGTTCTCTCCACATGACCATTCAGACCGCCGTTCTCATCGAGACTCTCACCGCCCTCGGCGCTGAGGTCCGCTGGTGCTCCTGCAACATTTTCTCCACTCAGGACCATGCTGCCGCTGCTATTGCTCGTGATAGCGCCTCCGTCTTTGCCTGGAAGGGTGAGACTCTGCAGGAGTACTGGTGGTGTACTGAGCAAGCGTTGGATTGGGGTCCCGATGGTGGTCCGGATCTGATTGTTGATGATGGTGGTGATGCCACGCTTCTGATTCATGAAGGGGTCAAGGCGGAGGAGATCTACGAGAAGACTGGCCAGCTCCCCGATCCCGCTTCTACTGACAATGCCGAGTTTCAACTCGTCTTGACGATTATTCGAGATGGACTGAAGACTGATCCCAAGAGGTACCATAAGATGAAGGACAGATTGGTTGGCGTTTCGGAGGAGACTACTACTGGTGTGAAGAGGCTTTACCAGATGCAGCTTAACGGTAGCTTGTTATTCCCTGCTATAAATGTCAACGACGCTGTCACCAAAAGCAAGTTCGATAATTTGTATGGATGCCGCCACTCCCTTCCTGACGGGCTGATGAGGGCTACTGATGTCATGATTGCCGGAAAGGTGGCTGTGGTCTGTGGTTATGGAGATGTTGGCAAGGGTTGTGCTGCTGCCCTTAAGCAAGCAGGGGCTCGTGTAATCGTTACAGAAATTGACCCAATCTGTGCCCTTCAGGCTCTCATGGAAGGTCTCCCAATCCTCACATTGGAAGATGTTGTCTCCGAGGCTGACATTTTTGTGACTACCACTGGCAACAAAGACATCATCATGGTGGACCACATGAGGAAGATGAAGAACAACGCCATTGTCTGCAACATCGGCCATTTTGATAATGAAATTGACATGCATGGACTAGAGACTTATCCAGGTGTAAAGCGCATCACAATTAAGCCTCAAACCGACAGGTGGGTCTTCTCTGAAACCAACTCAGGCATCATTGTGTTGGCGGAGGGACGACTTATGAACTTGGGGTGTGCCACAGGCCATCCTAGTTTTGTGATGTCTTGCTCATTCACAAATCAGGTGATCGCCCAGCTTGAGCTGTGGAAAGAGAAGGGAAGTGGAAAGTACGAGAAAAAGGTCTATGTTTTGCCAAAGCACCTTGATGAGAAAGTGGCTGCTCTTCACCTCAGCAAGCTTGGAGCCAAGCTCACCAAGCTCTCGAAAGATCAGGCGGATTACATTAGTGTGCCTGTTGAAGGTCCATACAAGCCCCCTCATTACAGGTATTGA 1458 51.1 MALSVEKTTAGREYKVKDMSQADFGRLEIELAEVEMPGLMSCRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEQALDWGPDGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGQLPDPASTDNAEFQLVLTIIRDGLKTDPKRYHKMKDRLVGVSEETTTGVKRLYQMQLNGSLLFPAINVNDAVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLPILTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMHGLETYPGVKRITIKPQTDRWVFSETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKGSGKYEKKVYVLPKHLDEKVAALHLSKLGAKLTKLSKDQADYISVPVEGPYKPPHYRY 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52315544 52317356 + Bma022489.1 Bma05g01300 83384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01300 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 1. 85 99 IPR020082 -
Bma05g01300 485 Gene3D - 243 404 - -
Bma05g01300 485 TIGRFAM ahcY: adenosylhomocysteinase 14 477 IPR000043 -
Bma05g01300 485 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 240 403 IPR015878 -
Bma05g01300 485 CDD SAHH 23 473 IPR000043 -
Bma05g01300 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 - -
Bma05g01300 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 242 - -
Bma05g01300 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 IPR000043 -
Bma05g01300 485 SMART AdoHcyase_NAD_2 240 403 IPR015878 -
Bma05g01300 485 SMART AdoHcyase_2 13 484 IPR000043 -
Bma05g01300 485 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 477 IPR000043 -
Bma05g01300 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 381 485 - -
Bma05g01300 485 Pfam S-adenosyl-L-homocysteine hydrolase 13 484 IPR000043 -
Bma05g01300 485 PIRSF SAHH 2 485 IPR000043 -
Bma05g01300 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 262 279 IPR020082 -
Bma05g01300 485 Gene3D - 15 485 IPR042172 -
Bma05g01300 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 240 403 IPR036291 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g01300 Bma06g01269 CCT
Bma04g01161 Bma05g01300 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01300 Bma-Chr5:52315544 Bma06g01269 Bma-Chr6:49798578 0 dispersed
Bma02g01197 Bma-Chr2:54069584 Bma05g01300 Bma-Chr5:52315544 0 transposed
Bma04g01161 Bma-Chr4:29994211 Bma05g01300 Bma-Chr5:52315544 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01300 K01251 - pvy:116136948 938.717