Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00196 ATGGAGATGGCGACGAAGAACGCCAACACCAGGGAGAAGAGGCTGAGACAACGAAGAATCTGGGTGGACATAGGGGATTTAAACTTGACAAACTCAGCAAATATTTTATATGGAGCAGAACCGACTGCCCAAGACGCCGCCATAGCCAACCTCGTTCTTCAATCCGACTCGAAAACCCTAATTCAAGCTCTTCAGAATTCCCAATTTCAATGGACTACGAACTTGGTCAACCAGGTTTTGAAGCGCCTGTGGAATCACGGACCAAAAGCGCTTCAGTTCTTCAAAAATCTCGAGCGCCATCCCACTTACGCTCACTCGTCGTCGTCCTTCGACCACGCGATCGACATTGCCGGTCGTTTGCGAAATTACAAGACTCTCTGGACCTTTGTGGCTCGAATGAGAGCTCGTCGCCTTGGCCCGACTCCCAAGACGTTTGCTATTATAACAGAGAGGTATGTATCTGCAGGTAAGCCCGATAGAGCAATTAAGGTCTTTTTGTCAATGCACGAACATGGTTGTCAACAAGATTTGAATTCGTTCAACACAATTCTTCATATTCTCTGTGAATCCAAACGAGTCGAAATGGCTTACAATAATCTGTTAAGAACTGGACAGACTATGGAAGCTTGGGATTTCTTCCTGCAAATGAAGAAGAGAAAATGTGAAATTGATGTTTTCACCTACACGACTATGGTTCACGGGTTTGGTGTTCTTGGGGAGCTTAAGAAAGCTCGTAAGGTGTTCGATGAAATGCACAAGAAAGGCGTTTCTCCTTCTGTTGCAACATACAATGCTATGATTCAGGTTTTGTGTAAGAAAGATAACGTCGAAAATGCAATTTCGACGTTTGAAGAGATGTTGACGAAAGGCCTCGTCCCAAATTCTACGACTTACAATGTCTTGATAAGAGGATTGTGTCATTCAGGTGACATGGAAAGGGCCGTGAAATTTATGGAGCGAATGAGTGACCATCATTGCGAGCCGAATGTTCAAACGTTCAATCTTTTGATCCGACATTTTTTGGAGGCCGGAGAGATAGAAAAGGGGCTGAGTACGTTTGAAAAAATGGGTGGGGATAATTGTTTCCCAAACTTGGATACTTACAATATTGTGATTAGTGCGATGTTTGTGAGGAAGAGATCAGAGGATTTGTTGACTGCTGGCAAGTTGTTGATTGAGATGGTCGACAGAGGGTTTCTTCCTCGGAGGTTTACTTTCAATCGAGTATTGAATGGGCTTTTGCTGACGAATAATCAAGGTTTTGCGCAGGAAATACTGAGATTACAGAGCAGGTGCCGGGGCCCTCTTCCTCGTCAATTTAAACTGTGA 1329 44.24 MEMATKNANTREKRLRQRRIWVDIGDLNLTNSANILYGAEPTAQDAAIANLVLQSDSKTLIQALQNSQFQWTTNLVNQVLKRLWNHGPKALQFFKNLERHPTYAHSSSSFDHAIDIAGRLRNYKTLWTFVARMRARRLGPTPKTFAIITERYVSAGKPDRAIKVFLSMHEHGCQQDLNSFNTILHILCESKRVEMAYNNLLRTGQTMEAWDFFLQMKKRKCEIDVFTYTTMVHGFGVLGELKKARKVFDEMHKKGVSPSVATYNAMIQVLCKKDNVENAISTFEEMLTKGLVPNSTTYNVLIRGLCHSGDMERAVKFMERMSDHHCEPNVQTFNLLIRHFLEAGEIEKGLSTFEKMGGDNCFPNLDTYNIVISAMFVRKRSEDLLTAGKLLIEMVDRGFLPRRFTFNRVLNGLLLTNNQGFAQEILRLQSRCRGPLPRQFKL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2399954 2404866 + Bma031274 Bma06g00196 83698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00196 442 SUPERFAMILY HCP-like 229 354 - -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Bma06g00196 442 Pfam PPR repeat family 258 307 IPR002885 -
Bma06g00196 442 Pfam PPR repeat family 176 235 IPR002885 -
Bma06g00196 442 Pfam PPR repeat family 328 375 IPR002885 -
Bma06g00196 442 Gene3D Tetratricopeptide repeat domain 45 197 IPR011990 GO:0005515
Bma06g00196 442 Gene3D Tetratricopeptide repeat domain 309 425 IPR011990 GO:0005515
Bma06g00196 442 Gene3D Tetratricopeptide repeat domain 198 308 IPR011990 GO:0005515
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 262 295 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 332 364 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 199 225 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Bma06g00196 442 TIGRFAM PPR: pentatricopeptide repeat domain 226 260 IPR002885 -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Bma06g00196 442 PANTHER OS02G0679200 PROTEIN 41 202 - -
Bma06g00196 442 PANTHER OS02G0679200 PROTEIN 201 442 - -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Bma06g00196 442 Pfam PPR repeat 152 173 IPR002885 -
Bma06g00196 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Bma06g00196 442 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 41 202 - -
Bma06g00196 442 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 201 442 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00799 Bma06g00196 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00196 Bma-Chr6:2399954 Bma02g00206 Bma-Chr2:2240165 1.63E-19 dispersed
Bma06g00196 Bma-Chr6:2399954 Bma08g00950 Bma-Chr8:48488166 2.39E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00196 - - vvi:100263983 608.601