Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00261 ATGGATGCCTTAGATTCCGTTGTCGATCCTCTCAGAGAGTTCGCCAAAGACAGCGTTCGTCTCGTTAAGAGGTGCCACAAGCCTGATCGCAAAGAATTTACCAAGGTTGCCTTTCGCACGGCGATTGGCTTTGTCGTGATGGGCTTTGTTGGATTCTTCGTCAAGTTGATCTTCATTCCGATCAATAACATCATCGTTGGTTCTGGTTAG 210 47.14 MDALDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 69
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3602433 3602766 - Bma022892.1 Bma06g00261 83763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00261 69 ProSitePatterns Protein secE/sec61-gamma signature. 14 42 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma06g00261 69 Hamap Protein translocase subunit SecE [secE]. 9 64 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma06g00261 69 SUPERFAMILY Preprotein translocase SecE subunit 5 65 IPR023391 -
Bma06g00261 69 Pfam SecE/Sec61-gamma subunits of protein translocation complex 13 65 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma06g00261 69 Gene3D Preprotein translocase SecE subunit 7 68 IPR023391 -
Bma06g00261 69 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 8 66 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bma06g00261 69 PANTHER SEC61 GAMMA SUBUNIT 1 69 - -
Bma06g00261 69 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3 1 69 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01251 Bma06g00261 CCT
Bma03g01251 Bma06g00261 ECH
Bma06g00261 Bma12g01083 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00253 Bma-Chr6:3491459 Bma06g00261 Bma-Chr6:3602433 4.61E-45 proximal
Bma09g00635 Bma-Chr9:43733801 Bma06g00261 Bma-Chr6:3602433 4.61E-45 transposed
Bma12g01083 Bma-Chr12:43126557 Bma06g00261 Bma-Chr6:3602433 2.14E-44 transposed
Bma03g01251 Bma-Chr3:20829954 Bma06g00261 Bma-Chr6:3602433 1.07E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00261 K07342 - ncol:116246856 129.028