Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00495 ATGGATGATTATTATATCAGCGATGAGGATTACCATGACTCCGATCAAGACTTTGAGGGTCTTGAGAACGATGAGTCTGATTTTCGTTCGGTTGCTGCAAAGGGTTCCACGACTAAGGTGATTACAAAAGAGTCTCTTCTTGCAGCTCAGAGAGATGATTTGCGTAGAGTAATGGATTTGCTGTCTCTAAGGGAGCATCATGCCAGAACGCTACTAATTCATTATCGTTGGGATGTGGAGAATTTGTTTGCTGTGCTTGTTGAGAAAGGAAAATCCTCCTTATTCGCCGCAGCTGGTGTTCGTGTGTCTGAGCACCCAAATCTTGATGCATCAGCCCCTACTTCTACTCTGACCTGTGGTGTCTGCATGGAGGAACTAGCCAGTAAGAAAGCAACAGTGATGGATTGTGGCCATTGCTTCTGCAACGACTGTTGGACAGAGCATTTTATTGTTAAAATAAATGAAGGTCAAAGTCGGCGCATCAGATGTATGTCATACAAGTGTAATGCTATCTGTGATGAGTCTGCGGTTAGAAGCCTAGTAAGTCAAAGGCACCCAGACCTTGCAGATAAATTTGATCGCTTTCTTCTTGAGTCATATATTGAGGATAATAAAAGAGTTAAGTGGTGCCCAAGTACTCCTAATTGTGGTAATGCAATAAGAGTAGAGGATGATGAATTCTGTGAGGTAGAATGTTCTTGTGGTATACAGTTTTGTTTTAGCTGCTCATCAGAAGCACATTCACCATGTTCATGTTTGATGTGGGAACTGTGGACAAAGAAATGTCGTGATGAATCTGAAACAGTTAATTGGATTACCGTTCATACAAAGCCTTGCCCGAAATGTCACAAACCCGTGGAGAAGAATGGTGGGTGCAATCTTGTTAGCTGCATTTGCGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGGGACCATACGTGGTCCAGCATTTCTGGTCACAGTTGTGGTCGGTATAAAGAGGAAACAGAAAAAAAAGCACAACAGGCAAAGAGAGATCTGTATCGCTATATGCACTATCATAACCGATACAAAGCACATACTGATTCTTTCAAGTTTGAAATTAAATTGAGGGAGACTATACAACAGAGGATATCAATTTTGGAGGAGAAGGAATTCATGCTTCGGGATTTCACTTGGGTAAATAATGGACTCTACAGACTCTTTCGATCAAGACGAGTCCTCTCATACTCATACCCATTTGCATTTTATATGTTTGGAGATGAGCTTTTCAAGGATGAGATGACAAACGAGGTACGTGAAATCAAACAGAATTTATTTGAGGACCAGCAACAGCAGCTTGAAGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAAGAGCCCTTTGACCAATATTCCGAAGATCGGGTAATGGAGACAAGGATGCAAGTTATCAATTTGTCAGTAATAACGGATACCCTTTGTAAGAAAATGTATGACTGCATCGAGAATGACTTATTGAGTTCTGTCAACCTTGGTAATCACAATATTGCCCCATACAAGTCAAAAGGAATCGAGAAGGCATTGGCAGCTTTGCAACAACAACAACGATATGAAAGAGAAGCAGCCCTTTCAGAGATCGAGCACAGCCGCAAAATGTTACTAGATAAGCTCAAAGAGTACAAAGGGGAGGATTTGGAAGTTATACAAGAGGCATCTGCTTTTGCTGCTGAGTCAGTGGAGCATAACCATGATCTTATGCTTCCTCCATACGCAATTCGTCCTCCACATTCTGTTAGACTCGAAAATGGCTATTTGACCCGTAAAACTTCACGATATGGGTTAACCTCGAGCTTCCCTTCAAATGAGGCGAAGAAGGAAATCAGTGAGTCATTTACAAATCATAAACAGACCGAATCCAAAAAAGCGAGAAGAGGAGTTGGATTGTTCTTAAGTGCTGCAGCAAAGACTGTGTTTACCATCGTTGGAGTGGTATCAATATTAAGTTTATCTGGTTTAGGACAAGACTTTGCAAAAAGATGTATATCTTTGAAGGTGTTGGACATGTTCAAACAGCTGAAGAAGGAAGAATTGGGCCCAATTTCTCGATGCCCTCCAGGCAAAGTTCTTGTAGTGGCAGACGGGGAAGCTCGGTGCATCGTGAAAGAGAGAATTGAAATTCCATTTTCTTCAGTTGTTGCAAAACCAGATGTGAACTATGGCTGTGGTTGA 2199 41.88 MDDYYISDEDYHDSDQDFEGLENDESDFRSVAAKGSTTKVITKESLLAAQRDDLRRVMDLLSLREHHARTLLIHYRWDVENLFAVLVEKGKSSLFAAAGVRVSEHPNLDASAPTSTLTCGVCMEELASKKATVMDCGHCFCNDCWTEHFIVKINEGQSRRIRCMSYKCNAICDESAVRSLVSQRHPDLADKFDRFLLESYIEDNKRVKWCPSTPNCGNAIRVEDDEFCEVECSCGIQFCFSCSSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEETEKKAQQAKRDLYRYMHYHNRYKAHTDSFKFEIKLRETIQQRISILEEKEFMLRDFTWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTNEVREIKQNLFEDQQQQLEANVEKLSKFLEEPFDQYSEDRVMETRMQVINLSVITDTLCKKMYDCIENDLLSSVNLGNHNIAPYKSKGIEKALAALQQQQRYEREAALSEIEHSRKMLLDKLKEYKGEDLEVIQEASAFAAESVEHNHDLMLPPYAIRPPHSVRLENGYLTRKTSRYGLTSSFPSNEAKKEISESFTNHKQTESKKARRGVGLFLSAAAKTVFTIVGVVSILSLSGLGQDFAKRCISLKVLDMFKQLKKEELGPISRCPPGKVLVVADGEARCIVKERIEIPFSSVVAKPDVNYGCG 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14876416 14886262 - Bma007542.1 Bma12g00495 91921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00495 732 SUPERFAMILY RING/U-box 115 202 - -
Bma12g00495 732 Coils Coil 533 553 - -
Bma12g00495 732 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 3 516 IPR031127 GO:0004842|GO:0016567
Bma12g00495 732 ProSiteProfiles Zinc finger RING-type profile. 119 163 IPR001841 -
Bma12g00495 732 SUPERFAMILY RING/U-box 190 258 - -
Bma12g00495 732 Coils Coil 421 441 - -
Bma12g00495 732 SUPERFAMILY RING/U-box 271 313 - -
Bma12g00495 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 205 IPR013083 -
Bma12g00495 732 Gene3D - 248 498 - -
Bma12g00495 732 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Bma12g00495 732 Pfam Ariadne domain 329 529 IPR045840 -
Bma12g00495 732 SMART ibrneu5 190 252 IPR002867 -
Bma12g00495 732 SMART ibrneu5 260 325 IPR002867 -
Bma12g00495 732 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 3 516 - -
Bma12g00495 732 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00495 Bma-Chr12:14876416 Bma13g01198 Bma-Chr13:45231196 1.92E-13 dispersed
Bma12g00493 Bma-Chr12:14859408 Bma12g00495 Bma-Chr12:14876416 3.71E-99 proximal
Bma02g00592 Bma-Chr2:13457170 Bma12g00495 Bma-Chr12:14876416 1.08E-62 transposed
Bma12g00495 Bma-Chr12:14876416 Bma05g00504 Bma-Chr5:23047089 4.41E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00495 K11968 - csv:101205066 900.582