Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00572 ATGTTCCAGCAGGTCAAGAAGGCCTCCCCTATGAATTCCCATGAGAGACCCATCTGCCTTCAAGGGGACTCTGGTCTGGTCCTCACCACTGACCCCAAGCCCCGTCTCCGATGGACTTCCGAGCTCCACGAGCGCTTTGTCGATGCCGTCACTCAGCTTGGCGGTCCAGATAAGGCCACTCCAAAGACAATCATGAGGGTCATGGGTGTGAAGGGTCTTACTCTTTACCACCTCAAGAGCCACCTTCAGAAATACAGGCTTGGAAAGCAACCGCATAAGGAATTCAACGATCACTCAATCAAGGATGGAATGAGAGCTGCGGCTTTAGATCTTCAACGAAACATTTCATCTTCTTCCAGCATGATGGAACGCAGCATGAATGACAGTAACTCACACACGGTTGATGCAATTAGGACGCAAATGGAGGTACAGAGAAGATTACAGGAGCAGCTAGAGGTTCAGAAACACCTTCAGCTGAGGATTGAAGCGCAAGGGAAGTACATGCAAAGCATACTGGAGAAGGCATGTCAAACCCTCGCCGGGGAAAACAGTACGAGTAATGCAGCTGTGCCGTTCAAGACAGCAAGAAATAACAATGCTAGTCCAAGTCCAGATCATGCTATTCCCCCTTTTAAGTTCGCATGCTTTGGAGACGCTGGTAATATCAGCGGCGGCGATAATGGTAGCGACCAAATTGACCATCTTCGTCAGAACATGGAAAAATGCAACAACGAGAGTGGTTTCATGTCGAGCAGTGGCAACTACTTGTGCTCGGAGAAGAAGAAGCCTGGCTCTTATGGAAAGAGCCCATTCATCTGGTGTGATGACATCCGACTGCAAGATAGCACTTTCAATTCAGATTGCTGCGCCAACATCATCCGTTGA 885 49.04 MFQQVKKASPMNSHERPICLQGDSGLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKYRLGKQPHKEFNDHSIKDGMRAAALDLQRNISSSSSMMERSMNDSNSHTVDAIRTQMEVQRRLQEQLEVQKHLQLRIEAQGKYMQSILEKACQTLAGENSTSNAAVPFKTARNNNASPSPDHAIPPFKFACFGDAGNISGGDNGSDQIDHLRQNMEKCNNESGFMSSSGNYLCSEKKKPGSYGKSPFIWCDDIRLQDSTFNSDCCANIIR 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24868502 24869902 - Bma007730.1 Bma12g00572 91998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00572 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Bma12g00572 294 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Bma12g00572 294 Gene3D - 32 90 - -
Bma12g00572 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 282 IPR044848 GO:0003700
Bma12g00572 294 Pfam MYB-CC type transfactor, LHEQLE motif 135 178 IPR025756 -
Bma12g00572 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Bma12g00572 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 282 - -
Bma12g00572 294 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00825 Bma-Chr8:46047913 Bma12g00572 Bma-Chr12:24868502 7.04E-78 dispersed
Bma12g00569 Bma-Chr12:24779078 Bma12g00572 Bma-Chr12:24868502 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58117 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00572 - - cpap:110817235 361.303