Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01083 ATGGATGCCCTAGACTCTGTCGTCGACCCTCTCAGGGACTTCGCAAAGGACAGCGTGCGCCTCGTCAAGAGATGTCACAAGCCTGATCGCAAAGAATTCACAAAGGTGGCATTCCGTACGGCTATTGGATTCGTTGTGATGGGATTTGTTGGATTCTTTGTGAAGCTGATTTTCATTCCCATCAATAATATAATTGTCGGATCTGGT 207 46.86 MDALDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 69
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43126557 43126888 - Bma030535 Bma12g01083 92509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01083 69 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3 1 69 - -
Bma12g01083 69 Pfam SecE/Sec61-gamma subunits of protein translocation complex 13 65 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma12g01083 69 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 8 66 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bma12g01083 69 ProSitePatterns Protein secE/sec61-gamma signature. 14 42 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma12g01083 69 Gene3D Preprotein translocase SecE subunit 7 68 IPR023391 -
Bma12g01083 69 Hamap Protein translocase subunit SecE [secE]. 9 64 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma12g01083 69 PANTHER SEC61 GAMMA SUBUNIT 1 69 - -
Bma12g01083 69 SUPERFAMILY Preprotein translocase SecE subunit 5 65 IPR023391 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01251 Bma12g01083 CCT
Bma03g01251 Bma12g01083 ECH
Bma06g00261 Bma12g01083 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00635 Bma-Chr9:43733801 Bma12g01083 Bma-Chr12:43126557 2.14E-44 dispersed
Bma12g01083 Bma-Chr12:43126557 Bma06g00261 Bma-Chr6:3602433 2.14E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01083 K07342 - nnu:104591739 129.413