Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00920 ATGAAGATTCAATGCAATGTCTGCGAGGCAGCGGAGGCGCACGTTTTATGCTTCGCGGACGAGGCGGCGTTATGCTGGGCTTGCGACGAGAAGGTTCACGCAGCCAACAAGCTGGCCAGCAAGCACCAGAGGGTTCCTCTTTCTGGCTCTTCTTCTCAAATGCCCAAATGTGACATTTGCCAGGAGATGAGTGGCTATATCTTCTGTTTAGAGGATCGAGCTTTACTTTGCCGAAAATGCGATGTCGCAATACACACAGCAAATGCTTTTGTATTGGCTCATCAGAGGTTTCTTCTTACTGGTGTGAAAGTAGGTCTTGAACCTCTTGCTTCCTCTTCCGAGTTGAAGCCTCAAAGTAGAGAGAAAACTTTGGAATCAAAGGGTAGCTCAGGCTCTCAAAGAGGCTTATCAAAGCCGTCAGCTGGTGAATTCAGTCAACAATTGCCTGTAAATCGTTGTGGGATTGGAGACTTCGCACCAACTGAGGCTCCTACGCATAACGGAGGATTTGTTTCTGGTGGGCTTCCTCAGTGGCATTTAGACGAGTTTATGGGTATGACTGAATTCAGTCAGAATTACCGGCCCGGCTATATGGACAATGGTTCATCTAAGGCTGATAGTGGTAAGCTCGGAGATTCCGACTCGTCCGTTCTAAGAACGGGCGACGGCGATCTGGACGACAACGATGAGAGCTTGGGTCAGGTTCCGGATTCATCTCGGGCCGTTCCTCAGAATCCGTCTCCACCTACAGCTTCAGGGTTGTACTGGCCGAGAAATTACTACAATTCATGGGATACCACAGCCTATGTTCCCGACATATACAGCTCGTCACCGGAGCAGAAGCCCCACCTCTATCGACATGGTGGTTTGGCATCAAAACGGCGGAGGCAATTCTAG 897 49.72 MKIQCNVCEAAEAHVLCFADEAALCWACDEKVHAANKLASKHQRVPLSGSSSQMPKCDICQEMSGYIFCLEDRALLCRKCDVAIHTANAFVLAHQRFLLTGVKVGLEPLASSSELKPQSREKTLESKGSSGSQRGLSKPSAGEFSQQLPVNRCGIGDFAPTEAPTHNGGFVSGGLPQWHLDEFMGMTEFSQNYRPGYMDNGSSKADSGKLGDSDSSVLRTGDGDLDDNDESLGQVPDSSRAVPQNPSPPTASGLYWPRNYYNSWDTTAYVPDIYSSSPEQKPHLYRHGGLASKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39618056 39620670 + Bma009997.1 Bma13g00920 93649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00920 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma13g00920 298 MobiDBLite consensus disorder prediction 232 257 - -
Bma13g00920 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Bma13g00920 298 MobiDBLite consensus disorder prediction 111 144 - -
Bma13g00920 298 CDD Bbox1_BBX-like 5 47 - -
Bma13g00920 298 Gene3D Classic Zinc Finger 1 93 - -
Bma13g00920 298 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bma13g00920 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma13g00920 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bma13g00920 298 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 297 - -
Bma13g00920 298 MobiDBLite consensus disorder prediction 124 144 - -
Bma13g00920 298 MobiDBLite consensus disorder prediction 272 298 - -
Bma13g00920 298 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Bma13g00920 298 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Bma13g00920 298 MobiDBLite consensus disorder prediction 195 257 - -
Bma13g00920 298 CDD Bbox1_BBX-like 56 99 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00461 Bma13g00920 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00152 Bma-Chr5:4548087 Bma13g00920 Bma-Chr13:39618056 1.97E-38 dispersed
Bma12g00543 Bma-Chr12:21913214 Bma13g00920 Bma-Chr13:39618056 3.54E-35 dispersed
Bma13g00920 Bma-Chr13:39618056 Bma15g00960 Bma-Chr15:36260262 6.06E-19 dispersed
Bma06g01437 Bma-Chr6:51082648 Bma13g00920 Bma-Chr13:39618056 9.48E-46 transposed
Bma10g00461 Bma-Chr10:5244910 Bma13g00920 Bma-Chr13:39618056 2.92E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58254 PF00643 zf-B_box 1.80E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00920 - - csv:101209756 380.563