Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00137 ATGGATATGGAGATCGATCTCTCTGCGCCAAATCCCCAAATCAAAGCTGATGAGCTTTTCAGAGCGGCGGAGGCCGGAGATTGTTCTATTTTCGAAGCTCTTTCTCGGGAGCAGTTTCTCAGTGCTTTTTCTCTGAGAAATGAGGATTGTCGGTCTCTCCTCCATGTTGCTGCCTCTTCAGACCGTACTGAGGTGGTGAAGTTGCTGTCTGCATCTGAGCAATCAGCTAGCATGGTAAATAGTGCGGATGAAGAAGGGTGGGCACCGCTTCATTCTGCGAGTAGCATTGGAAATGCAGAAATAGTGGACATTTTATTAAGCATCGGTGCTGATGTACATTTGAAAAACGATGGCGGCCGAGCTGCTCTTCACTATGCAGCCAGCAAAGGATGGTTAAAGATTGCTCAAACTCTGATTTCACATGGGGCAAAGCTCAATATGAAGGACAAGGTTGGTGGTACTCCACTGCATCGGGCTGCCAGCACAGGAAAGTCAGAGTTGTGCGAACTGTTGATTGAGGAAGGAGCAGAGCTTGATGCTGTTGATAAAGCTGGTCAAACTCCTCTTATGCATGCAGTAATTTGTAACAACAGGGAGGTAGCTCTTCTTCTGGTTAGGCATGGAGCCGACCTGGATGTGGAAGACAAGGAAGGATATACAGTGCTGGGTATGTCCACTGATCTCAGACCTGCGCTAATTGATGCTGCAAAGGCAATGTTTGAAGGATAA 729 47.46 MDMEIDLSAPNPQIKADELFRAAEAGDCSIFEALSREQFLSAFSLRNEDCRSLLHVAASSDRTEVVKLLSASEQSASMVNSADEEGWAPLHSASSIGNAEIVDILLSIGADVHLKNDGGRAALHYAASKGWLKIAQTLISHGAKLNMKDKVGGTPLHRAASTGKSELCELLIEEGAELDAVDKAGQTPLMHAVICNNREVALLLVRHGADLDVEDKEGYTVLGMSTDLRPALIDAAKAMFEG 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1466216 1467893 + Bma013116.1 Bma15g00137 96259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00137 242 Pfam Ankyrin repeat 119 150 IPR002110 GO:0005515
Bma15g00137 242 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Bma15g00137 242 SMART ANK_2a 85 114 IPR002110 GO:0005515
Bma15g00137 242 SMART ANK_2a 184 213 IPR002110 GO:0005515
Bma15g00137 242 SMART ANK_2a 151 180 IPR002110 GO:0005515
Bma15g00137 242 SMART ANK_2a 49 78 IPR002110 GO:0005515
Bma15g00137 242 SMART ANK_2a 118 147 IPR002110 GO:0005515
Bma15g00137 242 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
Bma15g00137 242 PRINTS Ankyrin repeat signature 152 167 IPR002110 GO:0005515
Bma15g00137 242 Pfam Ankyrin repeats (3 copies) 19 116 IPR002110 GO:0005515
Bma15g00137 242 Pfam Ankyrin repeats (3 copies) 152 215 IPR002110 GO:0005515
Bma15g00137 242 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Bma15g00137 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 45 116 - -
Bma15g00137 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 77 226 - -
Bma15g00137 242 SUPERFAMILY Ankyrin repeat 19 224 IPR036770 -
Bma15g00137 242 Gene3D - 11 152 IPR036770 -
Bma15g00137 242 Gene3D - 153 236 IPR036770 -
Bma15g00137 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 45 116 - -
Bma15g00137 242 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 77 226 - -
Bma15g00137 242 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Bma15g00137 242 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
Bma15g00137 242 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Bma15g00137 242 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Bma15g00137 242 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Bma15g00137 242 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00893 Bma-Chr5:46723429 Bma15g00137 Bma-Chr15:1466216 1.52E-10 dispersed
Bma07g00490 Bma-Chr7:5973301 Bma15g00137 Bma-Chr15:1466216 2.02E-06 dispersed
Bma07g00492 Bma-Chr7:6065537 Bma15g00137 Bma-Chr15:1466216 2.16E-07 dispersed
Bma13g00599 Bma-Chr13:13797660 Bma15g00137 Bma-Chr15:1466216 2.92E-07 dispersed
Bma14g01512 Bma-Chr14:30566865 Bma15g00137 Bma-Chr15:1466216 5.29E-06 dispersed
Bma15g00137 Bma-Chr15:1466216 Bma15g00558 Bma-Chr15:6427103 2.08E-06 dispersed
Bma15g00137 Bma-Chr15:1466216 Bma13g00036 Bma-Chr13:438643 4.89E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00137 K06694 - qsu:112012285 358.607