Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00199 ATGGCGCCAAAACGAAACAAGAGCCGAAGTTCTTCTCCGGACCCACATGGAATGTTTGCTGGGATGGTCGTTTTCTTAGTCCAAAATGGAGTTCAAGCTCGTCGATTGCAGGTATGGAAGCAAAAGTTGGAGCAGAACGGGGCTAGTATTGAGGAACGCTTTTCAAAAAGCGTCACTCATGTATTAGCAGTGAGCTTGGTTGAGCTTCTCGAGAAACTTAGGATTCTCCTTTATCAATGGCTAGAGGATAGTCTGAGTCTGGGAGAAAAAGTTTCAGAGGATTTATACCATATAAATCTGGATTTCGATATTGTAGATAAACAAGAGAAGTTTTCGGCCCTTAAAACCGATGGTGAAAAGATTGCGAAAGGTAATGAAGTTTTTCGATGTGAAACAGTGAAAGCTGAAATTAGGAATGACTTAAAGTATAATTCTTTGATTATAGCAACATATTCTGCTGAAGGTCCCGAGAAGTCCTTTGATAGTCAAAATCGATCAGATGCTAGCTCCAAGATCCCTGCTGTTATTGATAAGGATGCATCATTGACGTACAGTCCACCTGATATGAACAGAAACATAACTGAGATATTTGGAAAACTTATCAACATTTACAGAGCATTGGGTGATGAAAGAAGATCCTTTAGCTACTACAAGGCTATTCCAGTAATTGAGAAGGTACCATTTAGAATTGAGAGTGCCGACCAAGTCAAAGACCTGCCCGGCATTGGAAAGTCATTGCAGGATCACATTCAGGAGATTGTGGATACGGGGAAATTGTCAAAGTTGGAGCACTTCGGGACAGATGAGAAGGTAAAGACAATCTCCCTATTTGGAGAAATATGGGGCGTTGGTCCTGCCACAGCATTAAAATTATACGATAAAGGGCACCGTACGCTTGATGATTTGAGGAAGGAGGAATCATTAACCAATGCCCAGAAGATAGGGTTGAAATATTTTAATGATCTCCGGCAGAGGATCCCTCGCCATGAGGTTGATATTGTTTGTGGAGGATCATTTAGGCGAGGTAAAGCTTCCTGTGGGGATATGGACATTGTGATTACACATCCTGATGGGAAGAGTCATAAAGGCTTTTTAGCACAATACGTCAAGCATTTAAAGGAGATGAAGTTCTTGAGAGAGGATCTAATCTTTAGCACTCACAGTGAGGAGGGAACTGATTCTGGTGTCGACACGTATTTCGGCCTTTCCACATATCCCGGGCGAGAGCTTAGACACCGTATAGATTTTAAGGTATATCCAAGAGACATATACGCGTATGGGTTGATTGCATGGACGGGAAACGACGTACTAAATAGGCGGCTAAGATTACTAGCAGGATCGAAAGGGTTTCGACTCGACGATACAGGTCTATTTCCCGCGACACACGGGTCTGGGGGTAAAAAGGAGACAGAGAAGTTCAGAAATCATCTTCTAAAGAAGCTATCTAAGAAAGATGTTTACGGCGACTCCGTTGAACAAGTCGTCGGAATTTGCACCGAGATCTTCAGCACATTCTTACACAGTGAGTATGGTGCTCAAGCTTACTATGGATTTCATCCATTGACGGCGTATCTATCCGTTAACTACTTGGATCGGTTCCAAACAAACGGGTGGCATTTGCAACTTTTATCTGTTGCTTGTTTGTCGCTAGCTGCTAAAATGGAGGAGCCTTTGGCTCCTTGTTTATTGGATCTTCAGGTTGAGGGGGCCAAATATGTATTTGAACCCAAAACAGTATGTAGGATGGAGCTTCTTGTCCTCACAGTCCTGGATTGGCGTCTGAGATCCATAACCCCATTCAATTTTATTGATTTCTTTGCCTTCAAGGTTGATCCAACAGGAGCTTTCATTGCATTTCTCATCTCAAGAGCCTCAGAAATTATCGAAAGAATCAACAAATGTTATCGGTTAACACAAGAATCGATGCTTCATGGTAGCTGTAAGAAATCCCCTACAATCTTACCACAGTTTCAAATTAATCTTCAAGCTGAAATGAGGCTGATTGACTCATCACCATCGCCTTCCTCGTCCTCGTCCTCGTCTAGTAAAAGGAGAAAATTGAGTAACTGCTTGTGGGTAGTTAATGGCAAAGGAAACTGA 2100 42.38 MAPKRNKSRSSSPDPHGMFAGMVVFLVQNGVQARRLQVWKQKLEQNGASIEERFSKSVTHVLAVSLVELLEKLRILLYQWLEDSLSLGEKVSEDLYHINLDFDIVDKQEKFSALKTDGEKIAKGNEVFRCETVKAEIRNDLKYNSLIIATYSAEGPEKSFDSQNRSDASSKIPAVIDKDASLTYSPPDMNRNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKVPFRIESADQVKDLPGIGKSLQDHIQEIVDTGKLSKLEHFGTDEKVKTISLFGEIWGVGPATALKLYDKGHRTLDDLRKEESLTNAQKIGLKYFNDLRQRIPRHEVDIVCGGSFRRGKASCGDMDIVITHPDGKSHKGFLAQYVKHLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLSTYPGRELRHRIDFKVYPRDIYAYGLIAWTGNDVLNRRLRLLAGSKGFRLDDTGLFPATHGSGGKKETEKFRNHLLKKLSKKDVYGDSVEQVVGICTEIFSTFLHSEYGAQAYYGFHPLTAYLSVNYLDRFQTNGWHLQLLSVACLSLAAKMEEPLAPCLLDLQVEGAKYVFEPKTVCRMELLVLTVLDWRLRSITPFNFIDFFAFKVDPTGAFIAFLISRASEIIERINKCYRLTQESMLHGSCKKSPTILPQFQINLQAEMRLIDSSPSPSSSSSSSSKRRKLSNCLWVVNGKGN 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2027740 2040778 - Bma013181.1 Bma15g00199 96321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00199 699 PANTHER DNA POLYMERASE IV 18 475 - -
Bma15g00199 699 ProSitePatterns DNA polymerase family X signature. 337 356 IPR019843 GO:0016779
Bma15g00199 699 SMART cyclin_7 504 588 IPR013763 -
Bma15g00199 699 CDD NT_POLXc 191 472 IPR002054 GO:0003677|GO:0003887
Bma15g00199 699 Pfam DNA polymerase beta palm 329 420 IPR028207 -
Bma15g00199 699 Gene3D - 596 624 - -
Bma15g00199 699 ProSiteProfiles BRCT domain profile. 14 98 IPR001357 -
Bma15g00199 699 Gene3D BRCT domain 10 100 IPR036420 -
Bma15g00199 699 Pfam Cyclin, N-terminal domain 513 594 IPR006671 -
Bma15g00199 699 SUPERFAMILY BRCT domain 10 99 IPR036420 -
Bma15g00199 699 Gene3D DNA polymerase, thumb domain 430 489 IPR037160 -
Bma15g00199 699 PRINTS DNA-polymerase family X signature 429 442 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bma15g00199 699 PRINTS DNA-polymerase family X signature 282 299 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bma15g00199 699 PRINTS DNA-polymerase family X signature 413 422 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bma15g00199 699 CDD CYCLIN 516 587 IPR013763 -
Bma15g00199 699 SMART BRCT_7 16 88 IPR001357 -
Bma15g00199 699 Pfam Helix-hairpin-helix domain 190 255 IPR010996 -
Bma15g00199 699 Gene3D - 180 266 IPR027421 -
Bma15g00199 699 SUPERFAMILY PsbU/PolX domain-like 268 323 - -
Bma15g00199 699 SMART polxneu3 188 489 IPR002054 GO:0003677|GO:0003887
Bma15g00199 699 SUPERFAMILY Nucleotidyltransferase 329 465 IPR043519 -
Bma15g00199 699 Gene3D - 515 595 - -
Bma15g00199 699 Pfam Fingers domain of DNA polymerase lambda 276 322 IPR018944 GO:0003677|GO:0034061
Bma15g00199 699 Gene3D Beta Polymerase, domain 2 310 429 IPR043519 -
Bma15g00199 699 PANTHER DNA POLYMERASE TYPE-X FAMILY MEMBER 18 475 IPR022312 GO:0003677|GO:0003887|GO:0006281
Bma15g00199 699 SUPERFAMILY DNA polymerase beta, N-terminal domain-like 185 264 IPR027421 -
Bma15g00199 699 Pfam DNA polymerase beta thumb 428 467 IPR029398 -
Bma15g00199 699 SUPERFAMILY Cyclin-like 512 594 IPR036915 -
Bma15g00199 699 PRINTS DNA-polymerase family X pol beta-like signature 241 258 IPR002008 GO:0003677|GO:0006281
Bma15g00199 699 PRINTS DNA-polymerase family X pol beta-like signature 313 327 IPR002008 GO:0003677|GO:0006281
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00632 Bma15g00199 CCT
Bma01g00063 Bma15g00199 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01747 Bma-Chr14:37599007 Bma15g00199 Bma-Chr15:2027740 1.05E-88 dispersed
Bma15g00199 Bma-Chr15:2027740 Bma01g02590 Bma-Chr1:83529174 3.73E-30 dispersed
Bma01g00063 Bma-Chr1:642030 Bma15g00199 Bma-Chr15:2027740 3.63E-54 wgd
Bma14g01746 Bma-Chr14:37590330 Bma15g00199 Bma-Chr15:2027740 1.36E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00199 K03512 - csv:101209170 652.129