Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00238 ATGAAGTTACATGGAGAAATGTGCCAGGCGCTTTCTGCAATATATGGCAAAGTGATGTCAATTTTTCCTTCCTTGGAAGCAGCACGGCCAAGAAGCAAATCTGGGATTCATGCATTATGTTCCTTGCATGTAGCCTTAGAAAAGACAAAAAATATTCTTCAACACTGCTCGGAGTCCAGTAAACTTTACTTGGCCATAACTGGGGATTCCGTACTCTCAAAATTTGATAAGGCAAGATGCGCCCTTGAAGATAGTCTGAGATGCGTTGAAGATATTGTGCCACAATCAATTGGCTATCTGATTCAAGGGATAGTCAGTGAACTTGAGGGCACTGTGTTTTCTCTTGATCCTTTTGAGAAACAAATTGGTAATGATATTATCCCTCTTCTCCAGCAGGGGAGGAAATTCAGTAATTCCAAAAACAATAATGAGCTAGAGTTATTTCACCAAGCTGCCATTAAACTTGGAATAACCTCCTCTAGAGCAGCCCTTGCAGAGAGAAGAGCTCTTAAGAAACTTCTAGATAGGGCTCACGCTGAAGAAGATAAGCGGAAGGAATCTATCGTGGCTTATCTTTTACATCTCATGAGGAAATACTCCAAATCTTTTAGATGTGAATTGTCAGATGACAATGATTCCCAGGGCTCTGCACCTTGTTCTCCCACTGTTCAGGGTTCGCTTGATGACATTGATTCTGGACGGGATGGAAATAGAAATTACTTCGAAAGGGAAAGCTGTGGAATTGTGGGGGAGGCTGACAGAAATGAGGCAGATAATATGTCCGTGCAGGAGGAAACTTCTGAACCTAACGTGTTTGGTAGCTATGGGAATTTGTTGGTAGCCTTGAGTGGAGGAGATTGGATGAAAAAGTGTAAGGCAGTGGAGCAGATAAGGATCTTGCTGAAGGATGATGTAGATGCTAGGGACTTTATGGGAGCTAGTGGCTTTGTGGAGGCACTTCTGGAATTTCTAAACTTAGCTTTGCATGAAAGGAATCTAAGCGCTCAGGAAAGTGGATCGATGGCTCTCTTCAACCTTGCCGTGAACAATAATAGAAACAAAGAGATGATGTTAGAGGCGGGAGTAATTATGTTGTTGGAGAAAATGATACTGAACTCAAACTCACATGGATATGCAGCAGCCCTTTATCTAAATCTCTCCTGTCTTGAAGATGCAAAGTTTATCATTGGCTCAAGTAGAGCCGTCCCATTCATGACTCATCTACTCACAGGAACAGCTTCACCTCAATGGAAGTTCGATGCATTACATTCGCTTTACAATCTCTCCACATTGCCGTCCAATATTCCATACCTTCTCTCTGCCGGCATTGTGAGTAGCCTTCAAGTCCTTTTGGCAGGTTCTGATGACCACATTTGGAACGAAAGATCTATTTTGGAGTTTGTTCGGGATGGTGATAGAAGTGTAGCAGAATTGATGGACATAGGAAAGCAACTTTTAGGAAGGAGGCAGGTTCTTTCAGCTGTTCCACGCCTTATGGACACTGTGCAGGTAGAAGGAACCTTTCCTGATGGAACTAAGTTAGTCACCATTCATGATCCAATTGCTAGCGAAAATGGGAATCTGGAGCTAGCTTTACATGGATCTTTTCTTCCAATTCCTTTACTAGAGGCATTTCCTGGCATCGAAAGCACTACATTTCCTGGTGAAATTGTCTTTGGAGGTGGAAGTATTACCATTAATCCCGGAAGGAAAGCTGTAATCCTCAAAGTTGTCAATAATGGAGACCGGCCCATTCAGGTTGGCAGCCATTATCATTTTATTGAGGTTAACCCTTTCTTGGTTTTTGATCGGTGGAAATCACATGGCTTGCGCTTGAACATACCGGCTGGGACTGCCACACGTTTTGAGCCAATTTTAGTTTTTGTCCAGCCTGGGGAAGCTAAAAGTGTAGTCCTCATCTCTATCAGTGGTAACAAAGTTATCAGAGGGGGAAATAGCTTTGCTGGTGGTCCAGTTGATGGCACTAAATTTGAAGCATTCATGTCAGCTGTAAGCATGAAAAAGATTGGAACTATTGAAGAAAAAAATGCCAGAGAAGGTGTTACCGGCGAAGATCCTGATTTCACCAGTGTAATGTCACGTGAGGCATATGCAAATATGTATGGTCCTACTGTTGGTGACAAAATTCGACTAGGTGATACGGACTTATATGCTGAAATTGAACACGACTTTGCTATATATGGTGATGAATGTGTATTTGGAGGTGGAAAGGTTATACGAGAGGGAATGGGTCAGTCATGTGGACATCTACCGGCTGACTCTCTGGATACTGTAATAACAAATGCTGTGATCATTGATTATAGTGGAATAATTAAGGCAGATATTGGTATCAAAGATGGTATTATAGTTTCCCTGGGAAAATCTGGCAATCCAGATGTCATGCAAGGTGTTCATAGTAAAATGATCATTGGGGCTAACACTGAGGTTATTGCTGGAGAAGGATTAATCATTACAGCAGGAGCTATAGATTGTCATGTGCACTTTATATGTCCTCAGCTTGCATATGAGGCAATCACCAGTGGCATTACTACTTTGGTGGGAGGTGGAACTGGGCCAGCTAGTGGAACTCGCGCGACTACTTGCACACCATCCATATTACAGATGATGTTAATGCTCCAATCAACAGATGATATGCCTTTAAATTTTGGTTTTACAGGCAAAGGAAATAGTTCTCATCCTGATGAGCTACATGAAATAATAAAGGCGGGAGCAATGGGCTTGAAATTGCACGAGGATTGGGGAAGTACTCCAGCTGCAATAGACAATTGTTTATCTGTTAATATACATACTGACACCTTAAATGAATCTGGCTTTGTGGAACATACAATTGCAGCATTTAAAGGAAGAACAATACACACATACCACAGTGAAGGTGCTGGAGGTGGTCATGCCCCAGATATCATTTGCGTTTGTGGTGTGAAAAATGTTCTGCCGTCTTCGACAAATCCCACACGGCCCTTCACATCCAATACTATTGATGAGCATCTTGACATGCTGATGGTTTGTCATCACCTTGATAAGGATATACCAGAAGATGTTGCCTTCGCTGAATCAAGGATACGAGAGGATACAATTGCTGCAGAAGACATTTTGCATGACATGGGAGCAATTAGTATTATTTCTTCTGATTCACAGGCAATGGGTCGCATAGGAGAGGTTATAAGCAGAACTTGGCAAACTGCACACAAGATGAAAATACAAAGAGGACCTCTTGGTTCCGATGGGCCAAACAGTGACAACCTTAGGATCAAACGCTATATTTCCAAATACACAATAAATCCAGCAATAGTAAATGGCTGCTCTGAGTATATCGGATCAGTAGAGGATGTTTTCTTTTACTTTAATTATGAATTAGTACTCATGAGACCAATGTTTGGAGCCTTTGGCAAAGCAGGAAGCGCTCATTCCATTGCATTTGCGGCTCTAGAGAAAGGGGTTAAATCCTCGTATGGGCTCAGCAAGAGAGTTGAAGCAGTGAGCAATGTTAGGAAACTCACTAAACTTGACATGAAATTTAATGACGCACTTCCACACATCACCGTTGATCCAGAGACCTACACAGTCACAGCAGACGGAGAGATCATCACCTGTGCTGCCGCAGCCACAGTTCCCCTTTCTAGAAATTACTTCCTATTTTAA 3660 42.27 MKLHGEMCQALSAIYGKVMSIFPSLEAARPRSKSGIHALCSLHVALEKTKNILQHCSESSKLYLAITGDSVLSKFDKARCALEDSLRCVEDIVPQSIGYLIQGIVSELEGTVFSLDPFEKQIGNDIIPLLQQGRKFSNSKNNNELELFHQAAIKLGITSSRAALAERRALKKLLDRAHAEEDKRKESIVAYLLHLMRKYSKSFRCELSDDNDSQGSAPCSPTVQGSLDDIDSGRDGNRNYFERESCGIVGEADRNEADNMSVQEETSEPNVFGSYGNLLVALSGGDWMKKCKAVEQIRILLKDDVDARDFMGASGFVEALLEFLNLALHERNLSAQESGSMALFNLAVNNNRNKEMMLEAGVIMLLEKMILNSNSHGYAAALYLNLSCLEDAKFIIGSSRAVPFMTHLLTGTASPQWKFDALHSLYNLSTLPSNIPYLLSAGIVSSLQVLLAGSDDHIWNERSILEFVRDGDRSVAELMDIGKQLLGRRQVLSAVPRLMDTVQVEGTFPDGTKLVTIHDPIASENGNLELALHGSFLPIPLLEAFPGIESTTFPGEIVFGGGSITINPGRKAVILKVVNNGDRPIQVGSHYHFIEVNPFLVFDRWKSHGLRLNIPAGTATRFEPILVFVQPGEAKSVVLISISGNKVIRGGNSFAGGPVDGTKFEAFMSAVSMKKIGTIEEKNAREGVTGEDPDFTSVMSREAYANMYGPTVGDKIRLGDTDLYAEIEHDFAIYGDECVFGGGKVIREGMGQSCGHLPADSLDTVITNAVIIDYSGIIKADIGIKDGIIVSLGKSGNPDVMQGVHSKMIIGANTEVIAGEGLIITAGAIDCHVHFICPQLAYEAITSGITTLVGGGTGPASGTRATTCTPSILQMMLMLQSTDDMPLNFGFTGKGNSSHPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLSVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIICVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKDIPEDVAFAESRIREDTIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKIQRGPLGSDGPNSDNLRIKRYISKYTINPAIVNGCSEYIGSVEDVFFYFNYELVLMRPMFGAFGKAGSAHSIAFAALEKGVKSSYGLSKRVEAVSNVRKLTKLDMKFNDALPHITVDPETYTVTADGEIITCAAAATVPLSRNYFLF 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2376515 2390973 + Bma013224.1 Bma15g00238 96360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00238 1219 Pfam Urease beta subunit 554 655 IPR002019 GO:0035550|GO:0043419
Bma15g00238 1219 Pfam Amidohydrolase family 823 1115 IPR006680 GO:0016787
Bma15g00238 1219 SUPERFAMILY Urease, gamma-subunit 463 525 IPR036463 GO:0016151|GO:0043419
Bma15g00238 1219 Pfam Urease alpha-subunit, N-terminal domain 699 817 IPR011612 -
Bma15g00238 1219 TIGRFAM urease_alph: urease, alpha subunit 699 1116 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 Pfam Urease subunit beta-alpha linker domain 659 692 IPR040881 -
Bma15g00238 1219 ProSitePatterns Urease nickel ligands signature. 825 838 IPR029754 GO:0016151
Bma15g00238 1219 CDD Urease_alpha 699 1218 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 SUPERFAMILY Urease, beta-subunit 553 688 IPR036461 -
Bma15g00238 1219 Gene3D - 273 461 IPR011989 -
Bma15g00238 1219 Gene3D Urease, beta subunit 570 696 IPR036461 -
Bma15g00238 1219 PANTHER UREASE 463 1115 - -
Bma15g00238 1219 PANTHER UREASE 1124 1219 - -
Bma15g00238 1219 Gene3D - 462 545 IPR036463 GO:0016151|GO:0043419
Bma15g00238 1219 Hamap Urease subunit alpha [ureC]. 697 1219 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 SUPERFAMILY ARM repeat 281 457 IPR016024 -
Bma15g00238 1219 Gene3D - 1121 1217 - -
Bma15g00238 1219 ProSiteProfiles Urease domain profile. 827 1219 IPR017951 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 PRINTS Urea amidohydrolase (urease) protein signature 1024 1040 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 PRINTS Urea amidohydrolase (urease) protein signature 1091 1106 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 PRINTS Urea amidohydrolase (urease) protein signature 985 1002 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 ProSitePatterns Urease active site. 1007 1023 IPR017950 GO:0009039
Bma15g00238 1219 TIGRFAM urease_beta: urease, beta subunit 553 660 IPR002019 GO:0035550|GO:0043419
Bma15g00238 1219 CDD Urease_gamma 464 521 IPR002026 GO:0016151|GO:0043419
Bma15g00238 1219 Gene3D - 827 1105 - -
Bma15g00238 1219 SUPERFAMILY Metallo-dependent hydrolases 828 1219 IPR032466 -
Bma15g00238 1219 CDD Urease_beta 554 659 IPR002019 GO:0035550|GO:0043419
Bma15g00238 1219 Pfam Urease, gamma subunit 463 521 IPR002026 GO:0016151|GO:0043419
Bma15g00238 1219 Gene3D Urease, subunit C, domain 1 697 826 IPR011059 GO:0016810
Bma15g00238 1219 SUPERFAMILY Composite domain of metallo-dependent hydrolases 699 874 IPR011059 GO:0016810
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00018 Bma15g00238 CCT
Bma06g00574 Bma15g00238 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00238 Bma-Chr15:2376515 Bma02g00011 Bma-Chr2:233948 2.24E-14 dispersed
Bma01g00018 Bma-Chr1:310878 Bma15g00238 Bma-Chr15:2376515 1.28E-78 wgd
Bma15g00238 Bma-Chr15:2376515 Bma06g00574 Bma-Chr6:30839405 4.10E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00238 K01427 - qsu:112022271 1220.68