Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00175 ATGGTCGGCAGTTCGTTAGATTATTTCAAGGAGCAAGAGAAGAGTTGCAACATGAACTTGGTACTAGATGACGATATTCTTAGTTTTTTCGAAAGCTTAGAAGACGTCGGAGAATTTCCCAATATAGAGGACGACGCCATTGATGCGAGCTTTAAGGAATTGGAAAAAACAACGAGGCTAGCTTTTCATGAGAATCCAACTTCGTCTTGTAGGGTACAGAGGGTCAGTTTAGAGAGAGAAACTGAGTCCGAAACCTCGCTAAAAAGAAAGTGGTCAAGCTTAAACCAAACAAGAGAAAATCAACCTTCGTTTTCTCTGCCATTTTCTCGGGAAACAAACAAAAATGCAGAACAAAAGACATCCCACACGGCAGTGGAGAGGAACCGACGAAAGCAGATGAACGAGCATTTGTCTGTGTTGAAATTTCTCATGCCTTCTTTCTATCTCCAAAAGGGAGATCAAGCTTCCATTATAGGAGGTGTAGTGAGTTACATCAACGAGTTGCAGCATATTTTAAAAACGCTAGAGGGGAAGAAGAAGATAAAATTTTACAGTAATGAAGGTCTCTTAAACCCTAGTCCTAGAAACTCGCCATTGATAAGTCCAAGAACACCACAAAACATCAGTAGCTCGTATCAGCTTCCGAGGCTGAAAAAAGCTGTAGGCTTTATCCATTCTGATCCTTCCATTATTGCTAACCCACTTGACCCATCTCCTTCTTGTTCATCCTCTACGAATTCCTCCATTGTTGACAGCTTCGGCGAGCTTTTTGCGGCTAGCTCAAAGTCTGGTTTAGCTCAAGTTGAAGTGAGATTTACAGGTCCGAATTTGCTGTTGAAGACTGTTTCTTCTCCTTTTCCTGGTCAAGTTTTGAAGATAATGGACGCCATTGAAGATCTCGCGCTTGAAATTCTTCACTTGAACATCTCTACCAATGAAGGCGCCATGGTTAATACCTTCACCATCAAGATTGGAATTGAATGCAAAATTAGTGCTGAGGAACTCGCAATCAAAGTTCAGCAAACCTTCTGCTAA 1035 41.55 MVGSSLDYFKEQEKSCNMNLVLDDDILSFFESLEDVGEFPNIEDDAIDASFKELEKTTRLAFHENPTSSCRVQRVSLERETESETSLKRKWSSLNQTRENQPSFSLPFSRETNKNAEQKTSHTAVERNRRKQMNEHLSVLKFLMPSFYLQKGDQASIIGGVVSYINELQHILKTLEGKKKIKFYSNEGLLNPSPRNSPLISPRTPQNISSSYQLPRLKKAVGFIHSDPSIIANPLDPSPSCSSSTNSSIVDSFGELFAASSKSGLAQVEVRFTGPNLLLKTVSSPFPGQVLKIMDAIEDLALEILHLNISTNEGAMVNTFTIKIGIECKISAEELAIKVQQTFC 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2188247 2189554 + Bpe012021.1 Bpe03g00175 100680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00175 344 SMART finulus 123 174 IPR011598 GO:0046983
Bpe03g00175 344 Pfam Helix-loop-helix DNA-binding domain 118 169 IPR011598 GO:0046983
Bpe03g00175 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 184 IPR036638 GO:0046983
Bpe03g00175 344 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 4 344 - -
Bpe03g00175 344 Gene3D - 109 182 IPR036638 GO:0046983
Bpe03g00175 344 PANTHER TRANSCRIPTION FACTOR FAMA 4 344 IPR044283 GO:0003700|GO:0010052
Bpe03g00175 344 MobiDBLite consensus disorder prediction 99 126 - -
Bpe03g00175 344 MobiDBLite consensus disorder prediction 99 114 - -
Bpe03g00175 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 168 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00175 Bpe12g00372 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00175 Bpe-Chr3:2188247 Bpe13g00621 Bpe-Chr13:13181067 1.28E-43 dispersed
Bpe12g00372 Bpe-Chr12:8995190 Bpe03g00175 Bpe-Chr3:2188247 4.51E-78 wgd
Bpe03g00175 Bpe-Chr3:2188247 Bpe03g00243 Bpe-Chr3:3223273 1.48E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21070 PF00010 HLH 1.60E-10 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00175 K20558 - rcu:8274388 260.381