Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00805 ATGCCATCCATTCCCATACCCAGATTGCTTTCACCATCCTCACCTAGCAGCGGTTTTCATGCCTTGTTCTTTTCATGTTTTGTACAATGCCGAATGCCAAAAAGGTTGTTTAACTCTCCGTGTCATTTAACACTCAGTAACAGGATAAAAGCAATCAATAAAGTAGTTTTGGATGATAAATCCAGTGTTATTAGGTTTCCATCTGGTCAAAATGAAAGAGAGGAACTCCATGCCGATTTGTATAGTTGTTTAATTCGTGACTGTTGCAAAGTTGCTGATGTTGATGGAGCCTTAGTTTTTCTTGCACAAGTGGAAGCATTAGGTTACCGAGCTAGATTAACATCGTATACTTCTCTAATTGAAGTACTTGGAAGTGTAGGTAGGACTCTGGAAGCGGATGCTTTATTTCAAGAAATGATTAATTTTGGGTTTAAACCCGAAGTGACAGTCTTCAATTTTTTACTCAGAGGGTTTTTGAAGAAAGGCCAGTTAGATCTTGCATATAAAGCGTTGGCTGTAATGAGTGATTTAGGTGTTCAGAGAAATCAAGAAACTTATGAGATCCTCTTATATTGTTATGCTAGTGCCGGGCGGTTGGAAAATACTGGGGGTATTATCGATGAAATGAGAAAATTGGGATTTTATCTGAATTCATTTGTGTATAGTAAAGTTATTGTCTTGTATAGAGACAATGGCATGTGGAAGAAGGCTGTTGGCATCATTGAAGAGTTTAAAGAAAAGGGTATTCCACTTGATAAGCATATTTATAACAGCATCATCGTGTTTGAAAAAATGCAACAAGAAGGCATAAACCATGATATAACGACTTGGAATTCTATGATTCGATGGAGTTGTCGGAGTGGGAATCTAACTAAGGCTATTGAATTATTTTCGGCGATGCAAGGATCATGTGAACAGACAATAAAAGTGTTTCAACTAATGGAAGCAGAAGGAATTGAGCCTGTAAGGCCCCCCAAAACAGACAAGACAGCTATATTGAACGATGCCATCCAAATGGTGGAGAAAAATGAGCTTCGCGATGAGAAACAGAGGCTAGAAGGAGAGAAGGAGAAACTGGAGCAACAAATGAAATCTATGAAGACACCGCCCAGCTTCTTGTCTCCTACTGCAATGACAGCAGCATTTGGTGCTCCCGGCCAAGCTCCTGGCAGTAACTTGGTGCCTTTCATCGGCTATCCAGGAGTTGTCATGTGGCAGTTCACGCCACTAACTTCAGTCTACACATCACAGGATCATGTCCTCCGTCCTCCGGTTGCTTGA 1281 40.52 MPSIPIPRLLSPSSPSSGFHALFFSCFVQCRMPKRLFNSPCHLTLSNRIKAINKVVLDDKSSVIRFPSGQNEREELHADLYSCLIRDCCKVADVDGALVFLAQVEALGYRARLTSYTSLIEVLGSVGRTLEADALFQEMINFGFKPEVTVFNFLLRGFLKKGQLDLAYKALAVMSDLGVQRNQETYEILLYCYASAGRLENTGGIIDEMRKLGFYLNSFVYSKVIVLYRDNGMWKKAVGIIEEFKEKGIPLDKHIYNSIIVFEKMQQEGINHDITTWNSMIRWSCRSGNLTKAIELFSAMQGSCEQTIKVFQLMEAEGIEPVRPPKTDKTAILNDAIQMVEKNELRDEKQRLEGEKEKLEQQMKSMKTPPSFLSPTAMTAAFGAPGQAPGSNLVPFIGYPGVVMWQFTPLTSVYTSQDHVLRPPVA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27979792 27996863 - Bpe012715.3 Bpe03g00805 101310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Bpe03g00805 426 Coils Coil 342 369 - -
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Bpe03g00805 426 PANTHER OS06G0710800 PROTEIN 53 301 - -
Bpe03g00805 426 Gene3D Tetratricopeptide repeat domain 78 259 IPR011990 GO:0005515
Bpe03g00805 426 Gene3D Tetratricopeptide repeat domain 260 379 IPR011990 GO:0005515
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Bpe03g00805 426 Pfam PPR repeat family 146 194 IPR002885 -
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Bpe03g00805 426 Pfam PPR repeat 115 144 IPR002885 -
Bpe03g00805 426 Pfam PPR repeat 276 302 IPR002885 -
Bpe03g00805 426 Pfam Pentatricopeptide repeat domain 205 260 IPR002885 -
Bpe03g00805 426 TIGRFAM PPR: pentatricopeptide repeat domain 115 146 IPR002885 -
Bpe03g00805 426 TIGRFAM PPR: pentatricopeptide repeat domain 276 301 IPR002885 -
Bpe03g00805 426 TIGRFAM PPR: pentatricopeptide repeat domain 185 217 IPR002885 -
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 303 IPR002885 -
Bpe03g00805 426 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 53 301 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00805 Bpe08g01142 CCT
Bpe03g00805 Bpe09g00195 CCT
Bpe03g00805 Bpe09g00195 ECH
Bpe03g00805 Bpe08g01142 ECH
Bpe03g00805 Bpe11g00524 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00805 Bpe-Chr3:27979792 Bpe05g00177 Bpe-Chr5:6702620 2.76E-11 dispersed
Bpe13g00563 Bpe-Chr13:12826572 Bpe03g00805 Bpe-Chr3:27979792 2.18E-09 dispersed
Bpe09g00626 Bpe-Chr9:14925288 Bpe03g00805 Bpe-Chr3:27979792 1.99E-07 transposed
Bpe11g00524 Bpe-Chr11:4073329 Bpe03g00805 Bpe-Chr3:27979792 4.68E-47 wgd
Bpe03g00805 Bpe-Chr3:27979792 Bpe08g01142 Bpe-Chr8:13277068 2.93E-31 wgd
Bpe03g00805 Bpe-Chr3:27979792 Bpe08g00333 Bpe-Chr8:1978216 6.07E-34 wgd
Bpe03g00805 Bpe-Chr3:27979792 Bpe09g00195 Bpe-Chr9:1381713 1.27E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00805 - - rcu:8283056 299.286