Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00891 ATTGTGGGCCATAAAAGAGGCTCGTACGCTGTTAATCAAGAAGATGATTTCATGGCCCCTACAAGCAAAAGACACAAGGCTGGTGTTTCACTCTCTACAAAGGAGAGAAAAGAGAGGCTGAATGGAAAGATCACAGCTCTTCAACAGCTCGTTTCACCGTACGGAAAGACGGATACAGCTTCTGTTCTGCAGGAAGCCATGGGTTACATTCAATTTCTCCACGAACAGCTCAAGGTGTTGAGTGCTCCGTATCTCCATGGCTCTCCGACGGCGAAGACGCAGATAGAGACGTACAGATACAGCCTAAGAATAAGAGGTTTATCCATTGTTCCTCTCTGCTTTACTGAAGGAGTAGCCCGCAGCAATGGAGCTGATATATGGGCTCCTGTTTACATTAAGTCCCCTGTATTTCACGACCCCATTTCATCACTTCAT 435 46.44 IVGHKRGSYAVNQEDDFMAPTSKRHKAGVSLSTKERKERLNGKITALQQLVSPYGKTDTASVLQEAMGYIQFLHEQLKVLSAPYLHGSPTAKTQIETYRYSLRIRGLSIVPLCFTEGVARSNGADIWAPVYIKSPVFHDPISSLH 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5961235 5962014 - Bpe025667 Bpe04g00891 102700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00891 145 PANTHER TRANSCRIPTION FACTOR BHLH154 3 125 - -
Bpe04g00891 145 CDD bHLH_AtbHLH_like 30 81 IPR045239 -
Bpe04g00891 145 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 73 IPR011598 GO:0046983
Bpe04g00891 145 SMART finulus 30 79 IPR011598 GO:0046983
Bpe04g00891 145 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 85 IPR036638 GO:0046983
Bpe04g00891 145 Gene3D - 20 80 IPR036638 GO:0046983
Bpe04g00891 145 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 125 - -
Bpe04g00891 145 Pfam Helix-loop-helix DNA-binding domain 34 73 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g00891 Bpe14g00789 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00891 Bpe-Chr4:5961235 Bpe12g00300 Bpe-Chr12:4408219 1.28E-28 dispersed
Bpe14g00789 Bpe-Chr14:5980428 Bpe04g00891 Bpe-Chr4:5961235 2.12E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21282 None None None None Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00891 - - pper:18793757 171.785