Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00481 ATGTCTCAGCCTACGGTGCGACCTTCCTTCTCCCCTCAACAGCCGCCTCTTCATCCTCAGACATCATTTGATGGTGGAGGTGGTGTTCAAGTCCGATGCGCCGGTTGCCGAAAGATCTTGACGCTTGCTCCCGGTGTCAAAGATTTTTTCTGTCCTACTTGTCAACTGCTTCAGATATTACCTCCAGAGCTCTTCGGTAGGACCCACTCAAGACTCTCTCCTCCTTCCTCACCACCACCGTCTTCGCTGTTTTTACCATCTCCTTCTCTTCCCCCTCAACATGTGCCAGCCCATGGCATCGATCCTACTAAAATCCAACTCCCTTGTGCTAATTGCAAAGCCATTCTCAATGTACCTCATGGTCTGCTTAGATTCGCTTGTCCTCAATGTGGGGTTGACCTGGCTGTTGATGTTTTCAAAGCCAAGCAGTTCTTTCGGGAGGAACTCAACGAGGTAGCCATTGAAGTGGAGCGTGAAGAAGATGAAGGGTGTATGATGGGTGAAACTTTTACCGATTATCGCCCCCAAAAATTATCCATAGGGTCACCTCATCCGGATCTTATTGTTGAGACATCCTCTCTATCAGCTGTGCAGCCACCTGACCCCACTTATAATCTTAAAGTACAAGATGACTTTGAAAGATCAAAGGCTTTGTCATGTCTTCAAATTGAAACACTGGTGTATACTAGTCAGAGACACCTCTACCACCTTCCTGATGGAACAAGGGCAGGATTCTTTATAGGAGATGGAGCTGGAGTTGGTAAAGGTCGGACAATTGCTGGGTTAATTTGGGAGAATTGGCACCACGGAAGGAGAAAAGCATTGTGGATCTCTATTGGTTCTGACTTGAAGTTTGATGCTAGAAGAGACTTAGATGATGTAGGTGCGACTAATGTTCAAGTTCATGCTTTGAACAAGCTGCCTTATTCTAAGCTTGATTCAAATCTTTTAAAGGTCAGAGAAGGGGTTGTATTTTTGACATATAACAGCCTCATAGCGTCTTCAGAGAAAGGTCGGTCACGGATGCAGCAGCTTGTACAATGGTGTGGATCAGGATTTGATGGCCTCATCATATTTGATGAGTGCCACAAAGCCAAAAACTTGGTACCTGAAACTGGGAATCAACCAACTCGAACTGGTGAAGCTGTTATTGAGATTCAGGCTCGACTTCCTGAAGCTCGTGTTGTTTACTGCTCAGCTACTGGTGCAACTGAGCCACGCAATATGGGTTATATGGTACGACTTGGTCTTTGGGGCGCCAAAACATCATTCAGTGATTTTCGTGAATTTCTAGGGGCCCTGGATAAAGGTGGTGTAGGAGCTCTAGAACTTGTTGCCATGGATATGAAAGCAAGGGGTATGTATGTATGCCGCACGCTAAGCTATAGAGGAGTTGAGTTTGAAGTTATAGAAGCACCTTTAGAAGCTGAGATGATGGAAATGTACAAAAGGGCTGCAGAATTTTGGGTGGAGTTGCGGATGGAGTTACTATCTGCAAGTGCTTTTCTTACTAATGACAGGCCTACTTCTAGTCAACTATGGCGATTGTATTGGGCAAGCCATCAACGTTTCTTCAGGCACATGTGCATATCTGCCAAAGTTCCTGCTACTGTTAGGTTAACTAAGCAAGCCTTGATGGATGGTAAATGTGTTGTCATTGGTCTTCAAAGCACTGGAGAGGCACGGACTGAGGAAGCTGTAACAAAATATGGTCTTGAACTGGATGATTTTGTTTCGGGACCTCGGGAACTGTTGCTGAAATTTGTGGAGGAATATTATCCTTTGCCTGAAAAGCCTGAAGCTCCTTCTGGAGAAGAAAGTGTCAAGGAGCTTCAGAGGAAGAGACACTCTGCTACTCCTGGGGTTTCAATGAAAGGGAGAGCAAGAAAGGTCGCAAAGTGGAAGCCTATTAGTGATGGTGAAAGTGATGAAGAATCAGAAAGTGATTCTGCCCAGGAATCAATGGAATCTGATGATGAATTTCAGATTTGTGAGATATGCAATTCTGAAGAGGTATTTTCTTTGAAGTGTTTGATTTTTCAAATGCTAGTAATATATATATTGTTTCTAAATTTTCTATTGCAGGAAAAAAAGAAACTGCTTCAGTGTTCCTGCTGTGGCCACCTTTTTCATCACGCCTGTGCAGTCCCTCCTATAATGGATGTAGTACCTGGAAATTGGTCATGCAATGCGTGCAAGGAGAAAACAGATGACTACATTCAAGCTAAACATGCATATGTAACTGAACTTTTGAAGAGGTATGAGGCAGCATCAAATCGGAAGTCTAAAGTTATGGAGATAATTCGATCACTGGCTCTTCCAAACAATCCTTTGGATGATATCATTGATCAGCTTGGAGGCCCTGATAAAGTAGCAGAAATGACTGGAAGAAGAGGCATGCTTGTAAGAGCCTCGAATGGAAAAGGGGTAACTTATCAGGCACGCAACACAAAAGATGTCACCATGGAAATGGTCAACATGCATGAAAAACAACTCTTTTTGGATGGTAAGAAGTTGATTGCCATCATTTCTGAAGCTGGATCAGCTGGAGTCTCATTGCAAGCAGACAAAAGAGCGGTAAATCAGAAAAGAAGAGTTCACTTGACTCTAGAACTACCTTGGAGCGCTGACAGAGCAATCCAACAATTTGGAAGAACCCATAGGTCCAATCAAGCTTCTGCGCCAGAATACAGGCTACTATTTACTGATCTTGGTGGAGAACGTCGATTTGCATCTATTGTTGCAAAACGGTTAGAATCTCTTGGAGCCTTAACACAAGGAGATAGAAGGGCCGGACCCTCTTTGAGTGCTTACAATTTTGATAGTTCTTTTGGGAAGAGGGCATTGATGATGATGTATAAAGGAATTATGGAGCAGGAGCCTCTTCCTCTTGTACCTCCAGGATGCTCGAGTGACAAACCCACTACAATTCAGGATTTTATCACAAAAGCAAAGGCTTGTCTTGTGTCTGTAGGAATAGCTAGGCATTCAGTTTTGCCTAATGGGAGAGACGCTGGAAAGTCAGGTTGTCGTATAGTTGATTCTGATATGAATGATGTTGGACGTTTTCTCAATCGGCTTTTAGGATTGCCACCTGAAATTCAAAATAGGATTTTTGAGTATTTCGTCCGCATCTTGGATCTTCTACTTCAGAATGCACGCATTGAAGGAAGCCTTGACTCAGGGATTGTTGACATGAAAGCTAACATTATTGAGTTACAAGGGAATCCGAAGGTTATCTCAGAACCCAGATTCCTAACTAAGTTTATCTTTGAGTTGATAATGTTTTTTGTTTTGCAGACTGTTCATGTGGATCAGATGTCTGGTGCAACGACAGAGCTGTTTACATTCAATCTGGATCGTGGTGTCACTTGGGAGTCCTGCTGTACCATACTCAACGATAAGCAAAGAGACGGCCATGGTTCCACCTATGATGGATTCTATGAATCTAAGAGGGAGTGGATGGGGAGACATCATTTCATTTTAGCATTTGAAGGTTCTGTTCCTGAAATGTACAAAATAATCCGTCCTGCAGTTGGGGAGTCATTAAGAGAAATGCCTCTGGCTGAGTTGAAAACAAAATATCGGAAAATAACGTCTTTAGAGAAAGCGCATAGTGGCTGGGAAGATGAATATGGTGTTTCATCAAAACAGTGCATGCACGGCCCAAATTGTAAGCTGGGCAATTACTGTACTGTAGGCAGAAGAATACAGGAGGTTAATGTTTTGGGCGGCCTTATTCTTCCTGTTTGGAGCACCATTGAGAAGGCCCTTTCAAAACAGGCTCGACAGAGCCACAGGAGGCTTCGTGTTGTGCGTATAGTAACAACTACTGATAATCAGAGAATCGTGGGACTTTTTGTGCCAAATGCGGCTGTTGAAGCTGTGCTCCAAGGTTTGTCTCCCTTCCCGACATCCACACACAATTGCGCACTCTCTATTAGCTGA 3948 43.64 MSQPTVRPSFSPQQPPLHPQTSFDGGGGVQVRCAGCRKILTLAPGVKDFFCPTCQLLQILPPELFGRTHSRLSPPSSPPPSSLFLPSPSLPPQHVPAHGIDPTKIQLPCANCKAILNVPHGLLRFACPQCGVDLAVDVFKAKQFFREELNEVAIEVEREEDEGCMMGETFTDYRPQKLSIGSPHPDLIVETSSLSAVQPPDPTYNLKVQDDFERSKALSCLQIETLVYTSQRHLYHLPDGTRAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISIGSDLKFDARRDLDDVGATNVQVHALNKLPYSKLDSNLLKVREGVVFLTYNSLIASSEKGRSRMQQLVQWCGSGFDGLIIFDECHKAKNLVPETGNQPTRTGEAVIEIQARLPEARVVYCSATGATEPRNMGYMVRLGLWGAKTSFSDFREFLGALDKGGVGALELVAMDMKARGMYVCRTLSYRGVEFEVIEAPLEAEMMEMYKRAAEFWVELRMELLSASAFLTNDRPTSSQLWRLYWASHQRFFRHMCISAKVPATVRLTKQALMDGKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEEYYPLPEKPEAPSGEESVKELQRKRHSATPGVSMKGRARKVAKWKPISDGESDEESESDSAQESMESDDEFQICEICNSEEVFSLKCLIFQMLVIYILFLNFLLQEKKKLLQCSCCGHLFHHACAVPPIMDVVPGNWSCNACKEKTDDYIQAKHAYVTELLKRYEAASNRKSKVMEIIRSLALPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRASNGKGVTYQARNTKDVTMEMVNMHEKQLFLDGKKLIAIISEAGSAGVSLQADKRAVNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTDLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNFDSSFGKRALMMMYKGIMEQEPLPLVPPGCSSDKPTTIQDFITKAKACLVSVGIARHSVLPNGRDAGKSGCRIVDSDMNDVGRFLNRLLGLPPEIQNRIFEYFVRILDLLLQNARIEGSLDSGIVDMKANIIELQGNPKVISEPRFLTKFIFELIMFFVLQTVHVDQMSGATTELFTFNLDRGVTWESCCTILNDKQRDGHGSTYDGFYESKREWMGRHHFILAFEGSVPEMYKIIRPAVGESLREMPLAELKTKYRKITSLEKAHSGWEDEYGVSSKQCMHGPNCKLGNYCTVGRRIQEVNVLGGLILPVWSTIEKALSKQARQSHRRLRVVRIVTTTDNQRIVGLFVPNAAVEAVLQGLSPFPTSTHNCALSIS 1315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8640676 8692021 + Bpe021319.2 Bpe07g00481 106250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00481 1315 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 30 55 IPR005735 -
Bpe07g00481 1315 PANTHER STRAWBERRY NOTCH-RELATED 28 145 IPR026741 GO:0006355
Bpe07g00481 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 832 937 IPR027417 -
Bpe07g00481 1315 Pfam P-loop containing NTP hydrolase pore-1 183 483 IPR039187 -
Bpe07g00481 1315 PANTHER STRAWBERRY NOTCH-RELATED 147 1301 IPR026741 GO:0006355
Bpe07g00481 1315 Coils Coil 142 162 - -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 68 97 - -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 642 657 - -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 1 23 - -
Bpe07g00481 1315 SUPERFAMILY FYVE/PHD zinc finger 696 735 IPR011011 -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 73 95 - -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 598 657 - -
Bpe07g00481 1315 Pfam C-terminal domain on Strawberry notch homologue 776 1065 IPR026937 -
Bpe07g00481 1315 PANTHER OS08G0223700 PROTEIN 147 1301 - -
Bpe07g00481 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 426 IPR027417 -
Bpe07g00481 1315 ProSitePatterns Zinc finger PHD-type signature. 664 732 IPR019786 -
Bpe07g00481 1315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 746 IPR013083 -
Bpe07g00481 1315 SMART PHD_3 663 733 IPR001965 -
Bpe07g00481 1315 Gene3D - 222 413 IPR027417 -
Bpe07g00481 1315 ProSiteProfiles Zinc finger PHD-type profile. 661 735 IPR019787 -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 602 616 - -
Bpe07g00481 1315 PANTHER OS08G0223700 PROTEIN 28 145 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00481 - - jre:109003459 2005.33