Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00993 ATGGCCGGTGGACTCGCCGGCCACGGACTGAGTACTCCCGGAGTTCTCTTGCTTAATCTCGTGCAACACGTTATTTGTACGTCGGCGGGAACTAACCTCGGCGACGTATTCGAGATGGACTTTACCGATCTGGTGCGTCCGATTGCTCTCTTAAGTCACATTTTCGAAGAGATTAGGGATTTGCTGACGCATAATGAATTTGGAGTTTCCGATGCATCGACGTCGGCTCTGAAGGCCGCTAAGCGTCTACTTTTCGTCGCTCCTACTTTCATTTCCGGCAATAGCTGTTCTGATGAAGCTGTCCAGAAAATAGAATTCCAGTTCAAATACGTTACTTGGAAGTTGGAGAAAGCTTTGGGAAATCTACCATTTCCTCGATATGATATCTCAGAGGAAGTTCAAGAACAGGTTGAGCTGGCAAGAGCACAGTTGAGAAGAGCTGCTAAGAAGTATGGATCGCCATGTTCAATTACACCATCAGTTCTCTCTCAGTTGCTGGACCAAGAAATAAGCATTTTATTGGCCGACCAGTGGTTGAATGGTGTTCCTTTCGAGAATTATTGTACTATAGATGATGATGTTACTGTGAAGATGGATACTTTCTCAAGAATTGTGATGCAATTATTGTTCCCCGGACGATTTCTATACCCCATATCTCTGGAATTAATGAGAGAACCCTCGGTTTCATGTTATAATGGAAATGTAATCTTCTCCGCTGAGTTTATACGAATCTGGACTAGTTTATTGTTGAACTTTTATTATAATTGGTTTGCTTTGCCTCAAATCGCTTCATCAACTGGTTTGCTTTTATCGTTTCTTGTTCTACAGACGTATGAAAGATCCTACATTCAAAGATGGATAGATTGCGGCGATATGACATGCCCAAAATTTCAACAGAAGCTTCAAAATTTAACCCTTACACCAAATTACATTCTGAGAAGTCTCATCTCGCAGTGGTGTCTTAAGCACGGCGGAACATGTCGTGATGTCTGCGAAGAAATAGCAGCCATTGAAGCATTGGTTCACAAGCTTTACTGCCATTACATCGAGGAGCAAAGAGCAGCAGTGACTGAACTCCGATCCCTATCCAAAAGAAGTACAGATAACAGAATACTGATAGCAGAGGCAGGAGCCATTTCGGCTTTGGTCCAACTTTTGACGACGGAAGACCTAGAAACACAAGAGAATGCACAAAATGGGAAAAGTAGAGGGAAAAAAGATGCAGCCACTGCACTATTCAATTTATGCATTTATCCTGGAAACAAAGGCCGAGCTGTGAGGACAGGAATCCTCCCGGCTCTACTGAAGATGCTTACGGATCCAAATTCACGCATGGTAGACAATGCCCTCACCATAATGTCGTTACTCGCCAACCATCAAGAGGCGAAAGTTGCTATCCTAAAAGTTAGACCCATGCCAGTTTTGATAGACATTGTGAGAACGAGTTTGCCTCGGAACAGAGAAAACACGGCAGCCATTTTACTTGCATCGTGTAAGAGAGATTCTGAAAATCTCGCCTCTCTCGGAGCTGTTATACCTCTGACTGAGCTTGCAAAGAGTGGCACAGATAGAGCAAAACGGAAAGCTGACTTCATTGCTGGAGCATCTTCAGAAATTGCGGCAGCATTAGAAGGTGGTTAA 1641 43.69 MAGGLAGHGLSTPGVLLLNLVQHVICTSAGTNLGDVFEMDFTDLVRPIALLSHIFEEIRDLLTHNEFGVSDASTSALKAAKRLLFVAPTFISGNSCSDEAVQKIEFQFKYVTWKLEKALGNLPFPRYDISEEVQEQVELARAQLRRAAKKYGSPCSITPSVLSQLLDQEISILLADQWLNGVPFENYCTIDDDVTVKMDTFSRIVMQLLFPGRFLYPISLELMREPSVSCYNGNVIFSAEFIRIWTSLLLNFYYNWFALPQIASSTGLLLSFLVLQTYERSYIQRWIDCGDMTCPKFQQKLQNLTLTPNYILRSLISQWCLKHGGTCRDVCEEIAAIEALVHKLYCHYIEEQRAAVTELRSLSKRSTDNRILIAEAGAISALVQLLTTEDLETQENAQNGKSRGKKDAATALFNLCIYPGNKGRAVRTGILPALLKMLTDPNSRMVDNALTIMSLLANHQEAKVAILKVRPMPVLIDIVRTSLPRNRENTAAILLASCKRDSENLASLGAVIPLTELAKSGTDRAKRKADFIAGASSEIAAALEGG 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15332923 15335417 - Bpe003298.1 Bpe10g00993 110115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00993 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 319 IPR013083 -
Bpe10g00993 546 Coils Coil 130 150 - -
Bpe10g00993 546 PANTHER U BOX DOMAIN-CONTAINING 399 530 - -
Bpe10g00993 546 PANTHER U BOX DOMAIN-CONTAINING 18 200 - -
Bpe10g00993 546 PANTHER U BOX DOMAIN-CONTAINING 276 397 - -
Bpe10g00993 546 SUPERFAMILY ARM repeat 322 529 IPR016024 -
Bpe10g00993 546 ProSiteProfiles U-box domain profile. 276 326 IPR003613 GO:0004842|GO:0016567
Bpe10g00993 546 Gene3D - 320 537 IPR011989 -
Bpe10g00993 546 Pfam U-box domain 276 323 IPR003613 GO:0004842|GO:0016567
Bpe10g00993 546 SMART Ubox_2 276 319 IPR003613 GO:0004842|GO:0016567
Bpe10g00993 546 SUPERFAMILY RING/U-box 276 325 - -
Bpe10g00993 546 SMART arm_5 366 417 IPR000225 GO:0005515
Bpe10g00993 546 SMART arm_5 418 458 IPR000225 GO:0005515
Bpe10g00993 546 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 276 397 - -
Bpe10g00993 546 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 399 530 - -
Bpe10g00993 546 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 200 - -
Bpe10g00993 546 Pfam Armadillo/beta-catenin-like repeat 367 397 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe10g00993 Bpe11g01609 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00993 Bpe-Chr10:15332923 Bpe11g01609 Bpe-Chr11:12206034 0 dispersed
Bpe10g00993 Bpe-Chr10:15332923 Bpe11g00764 Bpe-Chr11:5755923 2.09E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00993 - - csv:101221534 384.03