Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe12g00164 | ATGAGTGGCCTGCTTAATGATCCTAAAATTAAGGAATTAGCAGAGGAGATAGCAAAAGATCCTGCATTCAATCAAATGGCTTCGCAGCTGCAGAAAACTTTTCAAGGACCAACAGTTGAGCAGGGAATCCCGCAGTATGATCCACAACAATATTTTTCCACAATGCAACAGGTCATGCAGAATCCTCAATTTATGTCTATGGCCGAGCAGCTTGGTAAAACATTAATTCAGAGTCCATCAATGTCTAGCGTGCTAGAGACTTTTGCAAATCCACCGGTTAATCAGCTTGAAGAACGAATGGCACGGATTAGAGACGATCCTTCCTTTAAGTCTATTTTGGAAGAGATAGAGAACAACGGCCCAGCTGCTATGATGAAGTACTGGAATGACAAAGACGTTATGCAGAAATTAGGTGAAGCAATGGGTCTCGCAGTTATTGAAGATGCAGAAGCTGCTGCTGACAACTCTGGCTTGGATGATTCTGAAGAACTGGTAAATGAAGACGAGTCAATAGTTCATAATACTGCTAGTGTTGGCGACGTTGAGGGATTGAAAGCTGCACTGGCTTCTGGTGCCAACAAGGACGAAGAAGATTCAGAAGGGCGAACAGCACTGCATTTTGCATGTGGCTATGGCGAGGTAAAGTGTGTTCAGATTCTGCTCGAGGCTGGAGCTGCTGCGGATGCTTTGGACAAGAACAAGAACACGGCACTTCATTATGCAGCCGGTTATGGCAGAAAGGAGTGTGTGGCTCTTCTGCTGGAGAATGGAGCTGCTGTCACCCTCCAAAATATGGATGGAAAAACTCCTATTGATGTTGCAAAGCTAAACAACCAACACGAAGTACTAAAACTGCTCGAGAAGGATGCCTTCCTGTAA | 879 | 44.71 | MSGLLNDPKIKELAEEIAKDPAFNQMASQLQKTFQGPTVEQGIPQYDPQQYFSTMQQVMQNPQFMSMAEQLGKTLIQSPSMSSVLETFANPPVNQLEERMARIRDDPSFKSILEEIENNGPAAMMKYWNDKDVMQKLGEAMGLAVIEDAEAAADNSGLDDSEELVNEDESIVHNTASVGDVEGLKAALASGANKDEEDSEGRTALHFACGYGEVKCVQILLEAGAAADALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQHEVLKLLEKDAFL | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1239026 | 1241301 | - | Bpe005401.1 | Bpe12g00164 | 112177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe12g00164 | 292 | Gene3D | - | 77 | 144 | - | - | |
| Bpe12g00164 | 292 | Pfam | Ankyrin repeats (3 copies) | 175 | 264 | IPR002110 | GO:0005515 | |
| Bpe12g00164 | 292 | Gene3D | - | 160 | 237 | IPR036770 | - | |
| Bpe12g00164 | 292 | ProSiteProfiles | Ankyrin repeat profile. | 200 | 232 | IPR002110 | GO:0005515 | |
| Bpe12g00164 | 292 | ProSiteProfiles | Ankyrin repeat region circular profile. | 200 | 232 | - | - | |
| Bpe12g00164 | 292 | PANTHER | - | 1 | 292 | - | - | |
| Bpe12g00164 | 292 | Pfam | STI1 domain | 99 | 142 | IPR041243 | - | |
| Bpe12g00164 | 292 | ProSiteProfiles | Ankyrin repeat profile. | 233 | 265 | IPR002110 | GO:0005515 | |
| Bpe12g00164 | 292 | SMART | ANK_2a | 233 | 262 | IPR002110 | GO:0005515 | |
| Bpe12g00164 | 292 | SMART | ANK_2a | 200 | 229 | IPR002110 | GO:0005515 | |
| Bpe12g00164 | 292 | SMART | ANK_2a | 167 | 196 | IPR002110 | GO:0005515 | |
| Bpe12g00164 | 292 | ProSiteProfiles | Ankyrin repeat region circular profile. | 233 | 264 | - | - | |
| Bpe12g00164 | 292 | SUPERFAMILY | Ankyrin repeat | 165 | 286 | IPR036770 | - | |
| Bpe12g00164 | 292 | Gene3D | - | 238 | 289 | IPR036770 | - | |
| Bpe12g00164 | 292 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 1 | 292 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bpe12g00164 | Bpe15g00922 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe12g00164 | Bpe-Chr12:1239026 | Bpe15g01241 | Bpe-Chr15:20954241 | 3.43E-08 | dispersed | |
| Bpe12g00137 | Bpe-Chr12:1021169 | Bpe12g00164 | Bpe-Chr12:1239026 | 1.73E-13 | transposed | |
| Bpe12g00164 | Bpe-Chr12:1239026 | Bpe15g00767 | Bpe-Chr15:18012290 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe12g00164 | - | - | pvy:116145673 | 479.559 |