Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00372 GAAGCAATCTTTGAAAAAATGGGTGATATTTTATCGGATTTTTTTGACAACAACGAATTCGGCGACACTACCAACTTGGTCGGAGACGACATTTTAAGCATTTTGGAGAGCTTGGACGACGTGGAGGAGTTTCCTGCGACGAACCAAGGTTTCAACAATGGCGGAACCTCAGCTCAGAAACCTTCTTCCTCAAATGCTTTGCTGTATCTTTCAGAAACTGAGTTTGAAAACTCACCAAAACCCAAGAGGTTGAAGACGACGAAGGAGGAAGCTAATCATCCGGATGGGCAACAGAGAATTTCTCATATTACAGTGGAGAGAAATAGAAGAAAGCAAATGAACGACCATTTGTCTGTTTTGAGGTCTCTGATGCCATGCTTTTACGTCAAAAGAGGAGATCAAGCGTCAATAATTGGAGGGGTGATCGATTATATCAACGAGTTGCAGCAAGTTCTTCAGGCCTTAGAGGCAAAGAAGCAAAGAAAAGTTTACAGTGAAATTTTAAGCCCTAGACTGGTTTCACCTTCACGACTCAGCCCTAGAAAACCAGCATTAAGCCCCAGAATCACCTTGCCAATCAGCCCAAGAACTCCTCAGCCAACTAGCCCTTACAAACCTAAGATGCAAAAACCTTTCCTCTCTCAAACAATGGCGGCGGTTAATTCCGTTGAGCCTTCGCCTTCTTCTTCATCTACGTCTACTTCTGGTGCAGAGGGTTTTAATGAGCTGGTTGCTAATTGCAAATCTAGTGCGGCTGAAGTTGAGGTTAAGTTTTCTGCTCCTAATGTTCTTTTGAAGACTGTTTCTCCTAAGATTCCTGGACAAGCCATGAAAATTATTTCTGCTCTGGAAAATCTCTCCCTTGAGATTCTTCAAGTTAATGTCAATACTGTTGATGAAACCATGGTTAATTCCTTCACCATCAAGATCGGAATTGAATGTCAACTAAGTGCGGAGGATCTAGCTCACAGAATTCAGCAAACCTTCTGCTAA 993 42.5 EAIFEKMGDILSDFFDNNEFGDTTNLVGDDILSILESLDDVEEFPATNQGFNNGGTSAQKPSSSNALLYLSETEFENSPKPKRLKTTKEEANHPDGQQRISHITVERNRRKQMNDHLSVLRSLMPCFYVKRGDQASIIGGVIDYINELQQVLQALEAKKQRKVYSEILSPRLVSPSRLSPRKPALSPRITLPISPRTPQPTSPYKPKMQKPFLSQTMAAVNSVEPSPSSSSTSTSGAEGFNELVANCKSSAAEVEVKFSAPNVLLKTVSPKIPGQAMKIISALENLSLEILQVNVNTVDETMVNSFTIKIGIECQLSAEDLAHRIQQTFC 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8995190 8996794 + Bpe005628.1 Bpe12g00372 112385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00372 330 MobiDBLite consensus disorder prediction 176 208 - -
Bpe12g00372 330 CDD bHLH_AtFAMA_like 100 171 - -
Bpe12g00372 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Bpe12g00372 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 166 IPR036638 GO:0046983
Bpe12g00372 330 MobiDBLite consensus disorder prediction 77 96 - -
Bpe12g00372 330 SMART finulus 103 154 IPR011598 GO:0046983
Bpe12g00372 330 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Bpe12g00372 330 PANTHER TRANSCRIPTION FACTOR FAMA 7 330 IPR044283 GO:0003700|GO:0010052
Bpe12g00372 330 Gene3D - 88 162 IPR036638 GO:0046983
Bpe12g00372 330 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 7 330 - -
Bpe12g00372 330 Coils Coil 141 161 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00175 Bpe12g00372 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00372 Bpe-Chr12:8995190 Bpe13g00803 Bpe-Chr13:14375415 2.67E-34 dispersed
Bpe13g00621 Bpe-Chr13:13181067 Bpe12g00372 Bpe-Chr12:8995190 2.80E-59 transposed
Bpe14g00842 Bpe-Chr14:6318173 Bpe12g00372 Bpe-Chr12:8995190 2.33E-48 transposed
Bpe12g00372 Bpe-Chr12:8995190 Bpe03g00175 Bpe-Chr3:2188247 4.51E-78 wgd
Bpe12g00372 Bpe-Chr12:8995190 Bpe03g00243 Bpe-Chr3:3223273 1.64E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22192 PF00010 HLH 7.20E-11 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00372 K20558 - jre:108984579 400.979