Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00479 ATGGATGCCATAGACTCAGTCGTCGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGCCTTGTCAAGAGGTGTCACAAGCCTGATCGCAAAGAATTCACAAAGGTTGCATTCCGTACGGCTGTCGGATTCGTTGTAATGGGATTCGTTGGATTCTTTGTGAAGCTGATTTTCATTCCGATCAATAACATAATTGTCGGATCTGGTTGA 210 46.19 MDAIDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAVGFVVMGFVGFFVKLIFIPINNIIVGSG 69
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10559664 10559996 + Bpe005741.1 Bpe12g00479 112492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00479 69 ProSitePatterns Protein secE/sec61-gamma signature. 14 42 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe12g00479 69 SUPERFAMILY Preprotein translocase SecE subunit 4 65 IPR023391 -
Bpe12g00479 69 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3 1 69 - -
Bpe12g00479 69 Gene3D Preprotein translocase SecE subunit 7 68 IPR023391 -
Bpe12g00479 69 Hamap Protein translocase subunit SecE [secE]. 9 64 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe12g00479 69 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 8 66 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bpe12g00479 69 Pfam SecE/Sec61-gamma subunits of protein translocation complex 13 65 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe12g00479 69 PANTHER SEC61 GAMMA SUBUNIT 1 69 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00892 Bpe12g00479 CCT
Bpe12g00479 Bpe15g00222 CCT
Bpe07g00892 Bpe12g00479 ECH
Bpe12g00479 Bpe15g00222 ECH
Bpe12g00479 Bpe13g00200 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00479 Bpe-Chr12:10559664 Bpe13g00200 Bpe-Chr13:9976332 1.25E-37 dispersed
Bpe12g00479 Bpe-Chr12:10559664 Bpe07g00892 Bpe-Chr7:14974056 9.09E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00479 K07342 - jre:108994290 130.183