Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01000 ATGAATGAGAAGGCCAACGTCACCAAGGAGCTTAACGCCCGCCACAGAAAGATATTAGAAGGGCTTCTTAAGTTGCCAGAGAATAGGGAGTGTGCTGATTGCAAAGCTAAGGGACCACGATGGGCTAGTGTTAATTTAGGCATTTTTATATGTATGCAATGTTCTGGGATCCACAGAAGCCTTGGTGTTCACATATCAAAGGTACGGTCTGCTACCTTGGATACTTGGCTTCCAGAGCAGGTTACATTTATACAATCAATGGGGAATGAGAAGGCAAACAGTTATTGGGAGGCGGAGCTACCTCCAAATTATGACAGAGTTGGGATTGAGAATTTTATTCGTGCAAAGTATGAAGATAAGAGATGGGTTTCTAAGGATGGCAAACCAAGATCACCTTCTCAAGTACAGGAGGAAAGGCCTTCTTTGCATGGGCAGAGGCCTGCGGAAAGAAGTGGATCAGGGTATTCAGGCCATTCTGAAAATTTGTTCGAGGAAAGGAAGAGACTTCAAACACATAGTGTGAAAGAGAGTATACCTGCCGCGAGAGTTAGTCTTCCTGTTCCTCCCAGAGGACCTGAACAGGTTGCTCCAGCCCCCAAACCATGCCAAGAGCCGAAACCAGAACCAGTTGTACAGCAAGCTGAAGCAACGAAACAGACTACAAATGATGCCCCAGCTGTCTCTCCAAAAGTTGATTATGCTACTGATCTTTTTAACATGCTATCCTTTGATGGCCCCTCTGATGATGGCTCAGCTGCAGTTTCTACAGATGATAGTTCATGGGCTGGTTTCCAGTCTGCTGAAGAAGCATCATCAGCAGAGAAACCTGCGCCAACAAAACCAGCTGAAGCCATTCCCCAGTCCACTTCTGGAATTGAGGATCTTTTCAAAGATTCAACCTTAGTTTCACCTTCTTTAGTTCCAGATAAACCTGTGAAAGATGTTAAAAATGATATAATGAGTCTTTTTGAAAAGTCCAATATGGTCTCTCCATTTGCTATGCATCAACAGCAACTTGCGATGCTAGCTCAGCAACAATCACTTCTCATGGCTGCTGCAGCTAAATCAGCTGCTGGGGACGCAAAATTTAGCAACGCTCAACCCGCTGTCCCCAATGGTACCAATGTTCCGCCTCAAAGTTGGCCAAATGTCACCTACCCGATCCCTGGATTGATGATGCAAATGGGTCCACAGGGTGGGCTGCAAACTACAGTGCAGACAATGAACAGGGGGCTGGCAAATCCAGTTGGGAGTTCTGTTTCATATCCTACATCTAGCCTTTATAGCTTCGGTCAAGTTTCTTCAGTGCCGGTGAATGGCGTGAGCACCACCACCACCAACACCACAGGGAAAAACAAACCTCAATCGACCGCATCGGTGTCATCAGCGACTCCTTCACAGTCAGGCAAAGAGTATGATTTCTCCTCTTTAACCCAAGGTATGTTTTCGAAGCATTAA 1458 45.88 MNEKANVTKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVTFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVSKDGKPRSPSQVQEERPSLHGQRPAERSGSGYSGHSENLFEERKRLQTHSVKESIPAARVSLPVPPRGPEQVAPAPKPCQEPKPEPVVQQAEATKQTTNDAPAVSPKVDYATDLFNMLSFDGPSDDGSAAVSTDDSSWAGFQSAEEASSAEKPAPTKPAEAIPQSTSGIEDLFKDSTLVSPSLVPDKPVKDVKNDIMSLFEKSNMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAAGDAKFSNAQPAVPNGTNVPPQSWPNVTYPIPGLMMQMGPQGGLQTTVQTMNRGLANPVGSSVSYPTSSLYSFGQVSSVPVNGVSTTTTNTTGKNKPQSTASVSSATPSQSGKEYDFSSLTQGMFSKH 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9474578 9480690 - Carg27980-RA Car01g01000 141864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01000 485 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Car01g01000 485 CDD ArfGap 19 117 - -
Car01g01000 485 MobiDBLite consensus disorder prediction 123 227 - -
Car01g01000 485 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Car01g01000 485 MobiDBLite consensus disorder prediction 190 206 - -
Car01g01000 485 MobiDBLite consensus disorder prediction 252 267 - -
Car01g01000 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 485 IPR044520 GO:0005096
Car01g01000 485 MobiDBLite consensus disorder prediction 247 290 - -
Car01g01000 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 485 - -
Car01g01000 485 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Car01g01000 485 MobiDBLite consensus disorder prediction 441 485 - -
Car01g01000 485 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Car01g01000 485 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Car01g01000 485 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Car01g01000 485 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Car01g01000 485 SMART arf_gap_3 16 130 IPR001164 GO:0005096
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01000 Car16g00846 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01000 Car-Chr1:9474578 Car18g00083 Car-Chr18:441192 7.53E-74 dispersed
Car12g01212 Car-Chr12:11538489 Car01g01000 Car-Chr1:9474578 8.61E-18 dispersed
Car13g00800 Car-Chr13:8831146 Car01g01000 Car-Chr1:9474578 4.71E-18 dispersed
Car14g00435 Car-Chr14:2268699 Car01g01000 Car-Chr1:9474578 1.16E-18 dispersed
Car16g01098 Car-Chr16:9407085 Car01g01000 Car-Chr1:9474578 1.52E-20 dispersed
Car19g00191 Car-Chr19:1795824 Car01g01000 Car-Chr1:9474578 1.43E-22 dispersed
Car01g01000 Car-Chr1:9474578 Car09g00811 Car-Chr9:4911691 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01000 K12486 - csv:101214277 738.413