Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01421 ATGGCTGTGGAGTTTATGGTGGGTTTTGGGGACGCTGCTGCTAATTTCACGCCCAGTATGGAAGAAAATGCTGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTTCATAGCTTCCTCACCTTGGTGTCTCATACTCCTAATCAACATCACTCTCAACACGATTCTTCCACTTCCACTGCGCCCGATGCTGCTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAAAAGGTCATTTCTTTACTCGACCGGAACCGAACTGGCCATGCTCGTTTCAGAAGGGCTCCGGTTGATTCTACTGCTTCCTTTCCGCCCAAGGTCAAGCCGCAACATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAACTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGTCCCACGCCTTACTCTGTTGTGCGTTTGCCTGGTCTGCCCAACAACAACCCCCATCAGCCTTCTAATCAGCCAAGTACTTTTCAACCCCAGCAGAATAAATCATCGGGGGGACTAAAAAATGGGTCTATAAACAGAAAAGACTCAACTTCCGCCATCAATTTCGCAGCCTCGCCGTCGATTTCCGCTGCAAATTCTTATATTTCATCCTTAACCGGAGACACCGAAAGCTTACACCCATCTCTGTCATCTGGTTTCCAGTTCACCAACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCCTCCTCCTCACTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCAGGAAGTGCGGTTCGTCTTCAGGTCGATGTCACTGTTCCAAGAAGAGATTCGTTATTGAACTGAGAGTGTTTGCATGGCTTATCAGGAAAAACAGAATGAAAAGAGTGATCAGAGTTCCAGCGGTTAGTTCAAAACTTGCGGACATCCCACCGGACGATTACTCATGGAGAAAGTACGGCCAAAAACCAATTAAAGGGTCTCCTCATCCGAGGGGATATTACAAGTGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAGCACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTTACTTACGAGAACGATCACAATCACGCCCTATCTACCCAAACACCTGCACCGCTTCTTCTCGAGTCATCATAA 1161 48.06 MAVEFMVGFGDAAANFTPSMEENAAVSAVQEAASAGIQSVHSFLTLVSHTPNQHHSQHDSSTSTAPDAAAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVDSTASFPPKVKPQHQDPSSSSPISVPQLKKQESVSAFKVYCPTPYSVVRLPGLPNNNPHQPSNQPSTFQPQQNKSSGGLKNGSINRKDSTSAINFAASPSISAANSYISSLTGDTESLHPSLSSGFQFTNMSQVSSAGKPPLSSSSLKRKCNSMDDSARKCGSSSGRCHCSKKRFVIELRVFAWLIRKNRMKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHALSTQTPAPLLLESS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12282329 12283813 + Carg10616-RA Car01g01421 142285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01421 386 MobiDBLite consensus disorder prediction 155 191 - -
Car01g01421 386 MobiDBLite consensus disorder prediction 158 191 - -
Car01g01421 386 MobiDBLite consensus disorder prediction 113 132 - -
Car01g01421 386 MobiDBLite consensus disorder prediction 238 256 - -
Car01g01421 386 Pfam WRKY DNA -binding domain 315 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01421 386 Pfam Plant zinc cluster domain 292 311 IPR018872 -
Car01g01421 386 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01421 386 MobiDBLite consensus disorder prediction 238 266 - -
Car01g01421 386 MobiDBLite consensus disorder prediction 98 132 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01421 Car09g00212 CCT
Car01g01421 Car09g00212 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01421 Car-Chr1:12282329 Car20g00828 Car-Chr20:5497044 2.50E-71 dispersed
Car02g01517 Car-Chr2:9786948 Car01g01421 Car-Chr1:12282329 8.72E-51 dispersed
Car01g01421 Car-Chr1:12282329 Car03g00867 Car-Chr3:6952711 3.27E-104 wgd
Car01g01421 Car-Chr1:12282329 Car09g00212 Car-Chr9:1055588 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2898 PF03106 WRKY 3.90E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01421 - - cmo:103493562 584.719