Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g00680 | GTTGTGGATGGTGGAGTAGCAGCAAATGAGAAATGGAGCTGGGGTACAGAGTTCCTATTTCCTAGTCTTCTCCTCTTATCTCCACTTGATCCGATCTCCCACAAAAGACTGCTGCCTAATCATCCACTTCTTCTAATAACAGCTGCCGATAGAAGAAGAAAAGATCACACCGTACCCCAGCTCCATTTCTCATTTGCTGCTACTCCGCCATCCACAACCTGCAGCAGATCAATCTCAAGAACATCAGTTCAAGGTGCAATGGACAATAGTATTCCTTTATCGGTAATTCGATACCGAGAATGTCTGAAGAATCACGCAGCAAGTACTGGAGGCTACGTTCTAGACGGCTGCGGCGAGTTCATGCCAAATGGAGAAGATGGAACGCCTGAGGCCTCTAAGTGTGCAGCATGTGAATGCCATCGGAACTTTCACCGAAAAGAGATGAGAGACGAGCCGCTCTCACAGCAAGCTTTACTCGGTGCTTTCTTCATCTCCAACTCGGTCAGAAACAATGGCCATCGCAGTGATGGGACGCCAGTTCCACTCTCTCGTCACCATCATTTACCGGCAGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCCAGTGAGGGCCTGAATATGTATTATCCGTCTGATAATGGAGCCCGGGAGCTGTTCTGTCAGCAGACACAACTGATGAAGAAACGATTCAGGACAAAGTTCACACAGGAACAGAAGGAGAAGATGGTAGAATTTGCTGAAAGGTTGGGGTGGAAGATTCAGAAACATGATGAACTAGAAATGCAGCAGTTCTGCGATGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAAAAAACAAGCCATGAAGAAGAAACAC | 903 | 47.29 | VVDGGVAANEKWSWGTEFLFPSLLLLSPLDPISHKRLLPNHPLLLITAADRRRKDHTVPQLHFSFAATPPSTTCSRSISRTSVQGAMDNSIPLSVIRYRECLKNHAASTGGYVLDGCGEFMPNGEDGTPEASKCAACECHRNFHRKEMRDEPLSQQALLGAFFISNSVRNNGHRSDGTPVPLSRHHHLPAVPISSMMMAFGGGSNGAPDESSSEGLNMYYPSDNGARELFCQQTQLMKKRFRTKFTQEQKEKMVEFAERLGWKIQKHDELEMQQFCDEVGVRRQVFKVWMHNKKQAMKKKH | 301 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6018644 | 6020013 | - | Carg00640-RA | Car03g00680 | 144732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g00680 | 301 | Pfam | ZF-HD protein dimerisation region | 96 | 148 | IPR006456 | - | |
| Car03g00680 | 301 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 98 | 147 | IPR006456 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car03g00680 | Car07g00426 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00680 | Car-Chr3:6018644 | Car05g00476 | Car-Chr5:2706441 | 1.02E-56 | dispersed | |
| Car12g00442 | Car-Chr12:2802897 | Car03g00680 | Car-Chr3:6018644 | 1.63E-65 | wgd | |
| Car16g00657 | Car-Chr16:4167959 | Car03g00680 | Car-Chr3:6018644 | 8.84E-33 | wgd | |
| Car03g00680 | Car-Chr3:6018644 | Car05g00207 | Car-Chr5:1077208 | 1.21E-60 | wgd | |
| Car03g00680 | Car-Chr3:6018644 | Car07g00426 | Car-Chr7:2171365 | 3.53E-128 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3137 | PF04770 | ZF-HD_dimer | 6.30E-29 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g00680 | - | - | cmos:111453071 | 452.981 |