Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01668 ATGGATTCTGAAACGACCCATTTCCTACCATTACCTGAATCTCTCCCCTCTCTGTGGATCTCCGATTCTTGCTCTTCCATGGAAGGTGAATTCTCGCAACCACAAGCGAAGGCAGATCGAAACCGAGGCGGAAAGAAACGAAGGCTCACACTGGATCAAGTTCGGATGCTTGAGAGAACTTTTAATGCTGAAAACAAGCTTGAACATGAGAGGAAGGTTCAAATTGCAGAGGAGATTGGTTTACGGCCTCGCCAAGTTGCAGTTTGGTTCCAGAATCGAAGAGCTCGATCCAAGACCAAGAAGATTGAAATTGATTATGAATCATTGAATGCTGAATATGATAAGCTCAAGAATGATTTTGACAGTCTTTTAAAAGTGAATCATGAACTGAAAGCAGAGGTTGATCAGCTGAGAGACAAATGGGCTGCTACTGAGAAGATGAACAATTCTAATGAACCAGTTGGAGATTTGTACAAGGTGGAAATGGGGTCATCCAGACAGGAACAGGGTAGCCGAAGCTCAAGCAAAAGTGATGTCTTTTATGCTGAGAGCCCGACCAGGGAAAACCAGTCACGGTCGGGGAATTTCTTGCGAGATGAAGAAGAAGATGATGAATTAGGGTACTTGGGGATACTAGAAGATGAACTTTCTGCTGATGAGCTCATAGATTCCTTTAATGTTATCAGTAGTGCAGCTGAAAATCAATCTTTCTGTTTCTGGTCTTTTTGA 729 42.94 MDSETTHFLPLPESLPSLWISDSCSSMEGEFSQPQAKADRNRGGKKRRLTLDQVRMLERTFNAENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKNDFDSLLKVNHELKAEVDQLRDKWAATEKMNNSNEPVGDLYKVEMGSSRQEQGSRSSSKSDVFYAESPTRENQSRSGNFLRDEEEDDELGYLGILEDELSADELIDSFNVISSAAENQSFCFWSF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9593458 9594520 - Carg01731-RA Car04g01668 147093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01668 242 Coils Coil 92 147 - -
Car04g01668 242 MobiDBLite consensus disorder prediction 164 192 - -
Car04g01668 242 Pfam Homeobox associated leucine zipper 100 140 IPR003106 GO:0006355|GO:0043565
Car04g01668 242 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Car04g01668 242 MobiDBLite consensus disorder prediction 163 201 - -
Car04g01668 242 Pfam Homeodomain 45 98 IPR001356 GO:0003677
Car04g01668 242 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01668 Car15g00313 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01668 Car-Chr4:9593458 Car13g00767 Car-Chr13:8605745 1.12E-35 dispersed
Car18g01088 Car-Chr18:10989262 Car04g01668 Car-Chr4:9593458 1.86E-65 wgd
Car18g00118 Car-Chr18:635442 Car04g01668 Car-Chr4:9593458 1.25E-32 wgd
Car04g01668 Car-Chr4:9593458 Car05g00829 Car-Chr5:8193673 1.01E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3385 PF00046 Homeodomain 8.60E-16 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01668 - K09338 cmax:111494298 444.121