Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02619 ATGATGACGGACGGTTTGATCTTCAACCGGTCTCCAGGTCACAGCAACATGCTGTTTTTCGGGAGTGGCGATTCCGTTCTTCGTGGACCAAGGTTCGCGATGGGGATGGAGGAAACTTCAAAGAGGCGACCCTTTTTCAGCTCACCGGATGACCTGTTCGACGACGACTACTACGATGACCAACCGCCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGTTTTGAATCAGAAAATAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAACAAACTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAATCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCGAGCTACGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTATCTGAGAAACTTCTAGCTAAGGAAGTGGTTGAATCCTCGTTTCAAGCTAAGAAATCCGAGCCATTTTTGGAACACCAAATCCTTGTTCCTGTTGTGCAACATAGTATGAAGATTGAGGACCACCATAGTTGCAGGAGCAATGGAAGTGCTGTGCTGGACGAGGACGGTCCTCATCTCGTAGACAGTGGGGATTCGTACCTCCTGAGCAATGACTATAATGGCTGTGTTTTGCCCGTTTTTGGAATGAACTCGGAGGAGGAGGATGGAAGTGACGATGGTCAGGGTTACTTCTCAGCCGTTTATACAACAGACGATCAGCAGACGAATGAGGTAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA 837 48.63 MMTDGLIFNRSPGHSNMLFFGSGDSVLRGPRFAMGMEETSKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELANKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFVVKENERLKAEVASLSEKLLAKEVVESSFQAKKSEPFLEHQILVPVVQHSMKIEDHHSCRSNGSAVLDEDGPHLVDSGDSYLLSNDYNGCVLPVFGMNSEEEDGSDDGQGYFSAVYTTDDQQTNEVEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20454193 20456265 + Carg04426-RA Car04g02619 148044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02619 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Car04g02619 278 Pfam Homeobox associated leucine zipper 120 161 IPR003106 GO:0006355|GO:0043565
Car04g02619 278 Coils Coil 140 167 - -
Car04g02619 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Car04g02619 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02619 Car14g00587 CCT
Car04g02619 Car11g01382 CCT
Car04g02619 Car15g00313 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00718 Car-Chr4:4163002 Car04g02619 Car-Chr4:20454193 6.92E-27 dispersed
Car04g02619 Car-Chr4:20454193 Car13g00767 Car-Chr13:8605745 1.95E-45 dispersed
Car11g01382 Car-Chr11:11285730 Car04g02619 Car-Chr4:20454193 2.72E-76 wgd
Car14g00587 Car-Chr14:3198557 Car04g02619 Car-Chr4:20454193 1.16E-72 wgd
Car15g00313 Car-Chr15:1688606 Car04g02619 Car-Chr4:20454193 3.56E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3475 PF00046 Homeodomain 3.60E-17 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02619 K09338 - csv:101210106 473.011