Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00661 ATGAAGACAGGTCAAAAGTGGCAATTAGAAATGGGCGATATGAAAATTCTGCCCGGTCCTCGATCTCGTACTACCAAGAGACCGTTATGGATTATTATCTTGGTTTCTATGGTTAGTGTGTTCCTAATATGTGCCTATATCTATCCACCCAATGGGACAGGTGCCTGTTACATATTTTCTTCGAAGGGCTGCAAGGTTATTACTGACTGGCTCCCACCTGCACCTGCAAGGGAATGTACTGATGCTGAGATTGCATCACGTATTGTTATTAGAGAAATCTTGAACATGCCATTCGTCGCGTTAAAAACTCCTAAAATTGCATTCATGTTCATGACTCCTGGTTCCCTGCCTTTTGAGAAGCTATGGGATAAGTTTTTCCATGGCCATGAAGGGAAATTCTCTGTTTATGTCCATGCATCTAAGGAAAAGCCGGTGCACGTTAGCCGTTACTTCGCTGGTCGTGAAACTCATAGCAATGAGGTCATTTGGGGTAAAATCTCCATGGTTGATGCAGAGAGACGATTGTTAGCAAATGCTCTCCATGATCCTGATAATCAGCACTTCGTTTTACTTTCTGATAGTTGTGTACCATTGCATAATTTTGATTATATCTACCAGTATTTGATTAATACAAATATCAGCTATGTAGATTGCTTTAACGATCCTGGTCCGCACGGAAACGGGAGGTATTCGGAGCACATGTTACCTGAAATTGAGATGAAAGACTTCAGAAAGGGTGCTCAGTGGTTCTCGATGAAGCGACAACACGCTTTGATTGTCGTGGCTGACAATCTTTACTATTCAAAATTTCGAGATTATTGCAAGCCAGGTCTGGAGGGACACAATTGCATTGCAGATGAGCATTACTTGCCCACCTTTTTCCATATGACAGATCCTGGAGGGATTGCAAACTGGTCAATTACTCACGTTGATTGGTCTGAAAGAAAGTGGCATCCAAAGTCGTACGGGGCTGAAGATGTTACCTACGAACTTCTACAAAATATCACGTCAATCGATGTCAGCGTGCACGTTACAAGCGACGAGAGGAAGGAAGTGCAAAGATGGCCATGCTTATGGAACGGTGTACACAGGCCATGTTACTTGTTTGCAAGGAAGTTCTATCCAGAGGCTCTAAATAACCTTCTGAATCTCTTCTCCAACTACTCATCAATTTCAGACTAA 1182 42.64 MKTGQKWQLEMGDMKILPGPRSRTTKRPLWIIILVSMVSVFLICAYIYPPNGTGACYIFSSKGCKVITDWLPPAPARECTDAEIASRIVIREILNMPFVALKTPKIAFMFMTPGSLPFEKLWDKFFHGHEGKFSVYVHASKEKPVHVSRYFAGRETHSNEVIWGKISMVDAERRLLANALHDPDNQHFVLLSDSCVPLHNFDYIYQYLINTNISYVDCFNDPGPHGNGRYSEHMLPEIEMKDFRKGAQWFSMKRQHALIVVADNLYYSKFRDYCKPGLEGHNCIADEHYLPTFFHMTDPGGIANWSITHVDWSERKWHPKSYGAEDVTYELLQNITSIDVSVHVTSDERKEVQRWPCLWNGVHRPCYLFARKFYPEALNNLLNLFSNYSSISD 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4116509 4122240 + Carg23930-RA Car05g00661 149047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00661 393 Pfam Core-2/I-Branching enzyme 106 335 IPR003406 GO:0016020|GO:0016757
Car05g00661 393 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 4 390 - -
Car05g00661 393 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 4 390 IPR044174 GO:0016757
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01334 Car05g00661 CST
Car05g00661 Car12g00861 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00661 Car-Chr5:4116509 Car14g01132 Car-Chr14:9982274 4.02E-80 dispersed
Car12g00269 Car-Chr12:1783918 Car05g00661 Car-Chr5:4116509 1.47E-163 transposed
Car10g00362 Car-Chr10:1779178 Car05g00661 Car-Chr5:4116509 3.06E-66 wgd
Car11g00349 Car-Chr11:1921713 Car05g00661 Car-Chr5:4116509 0 wgd
Car12g00861 Car-Chr12:8390922 Car05g00661 Car-Chr5:4116509 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00661 - - csv:101219592 794.653