Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g00426 | ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATCAATCAAATGCGGAATCTTCAACCAAACTGCCTAATTCTGACCATTCACATCTAACACCAGCTGATACCAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCAACTGAATCAAAACCATCACAAACTGAGTCTGCATCAGTATTTACACAAACACACAACAGACCATCCTGTAGCAACCCCAGATCCAGTCCAGACCTCCGTTACTGCCTCACCCTCTGCAGATACTCAGCCGATCGCAAGCAGCAGATCAATCTCAAGAACACCACCTGCAAGTAATAATGTTATTCCTTCAGTTCGGTATCGAGAATGTTTGAAGAACCACGCAGCGAGTACTGGAGGCCATGTTCTCGATGGTTGTGGCGAGTTCATGCCTGGTGGAGAAACTGGAACGCCCGAGGCCCTGAAGTGTGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGGTGAAAGATCACGAGCCCACACAGCTAGCTGTACCCAGTGGCTTTTTCATCTCCAACACCATAAGAAACAATGGCCATCGCACTGATAGGTCACCAGTTCCCCTCTCCCGCCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGAAGAGTCTTCAAGTGAAGATCTAAACATGTTTCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCAACAATTAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGAAGAGTTTGCTGAAAAACTGGGGTGGAGAATTCAGAAACACGATGAATTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAACGTAA | 972 | 47.22 | MEMRGEDEEIGTPSPLCYQSNAESSTKLPNSDHSHLTPADTRRDHTVPQLHFSHQLNQNHHKLSLHQYLHKHTTDHPVATPDPVQTSVTASPSADTQPIASSRSISRTPPASNNVIPSVRYRECLKNHAASTGGHVLDGCGEFMPGGETGTPEALKCAACECHRNFHRKEVKDHEPTQLAVPSGFFISNTIRNNGHRTDRSPVPLSRHHQLPAVPISSMMAFGGSNGAPEESSSEDLNMFHQSNNGARDLFGQQQQLMKKRFRTKFTQGQKDKMEEFAEKLGWRIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQT | 323 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2171365 | 2172336 | - | Carg16049-RA | Car07g00426 | 151660 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g00426 | 323 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
| Car07g00426 | 323 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Car07g00426 | 323 | MobiDBLite | consensus disorder prediction | 79 | 115 | - | - | |
| Car07g00426 | 323 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 121 | 170 | IPR006456 | - | |
| Car07g00426 | 323 | MobiDBLite | consensus disorder prediction | 74 | 115 | - | - | |
| Car07g00426 | 323 | Pfam | ZF-HD protein dimerisation region | 119 | 171 | IPR006456 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car03g00680 | Car07g00426 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car07g00426 | Car-Chr7:2171365 | Car07g00499 | Car-Chr7:2500572 | 6.38E-54 | dispersed | |
| Car16g00657 | Car-Chr16:4167959 | Car07g00426 | Car-Chr7:2171365 | 2.17E-34 | dispersed | |
| Car18g01061 | Car-Chr18:10824746 | Car07g00426 | Car-Chr7:2171365 | 2.96E-46 | dispersed | |
| Car12g00442 | Car-Chr12:2802897 | Car07g00426 | Car-Chr7:2171365 | 1.61E-70 | wgd | |
| Car03g00680 | Car-Chr3:6018644 | Car07g00426 | Car-Chr7:2171365 | 3.53E-128 | wgd | |
| Car05g00207 | Car-Chr5:1077208 | Car07g00426 | Car-Chr7:2171365 | 6.77E-68 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3828 | PF04770 | ZF-HD_dimer | 1.90E-30 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g00426 | - | - | csv:101220687 | 499.59 |