Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car09g00239 | ATGGATTCTTTTGCAGGTCTCATCGGGGAAGGGGAATGGGATTTGTGCAGCTCAATTTTATCTATGGAGGAGCTTGATTTCACGCCGCTTATTCCTCCGCCCACGGCGGAGATGCCCGATTGGGTCTGTCATTTGGATTCTTTCACGCCCAATTTGCCTTCTTGTGGCAATGCTATCGATCAATTCCCCTGTATTGCTGCTGCTGATCATTATATGTCCATGTCTAATGCTGCCATTGAAGAGAACAAGATGGACTCCATTTTCTCAGCCTGTACTGACGTTTTGCTGCAAGAGATCTCTGTTTTTTCGGGTGAAGATAGATATCTAAACATGGATGTTCAAACCCAGATAGGGAATGATCATAATGCTACCAATTCTGCTAAGGCATTCCATCACAAAAGGAAATCCATTGTCGTCGCTGATGATGATGATCATCATCACAATAAGCTCAACAACCCTACTAAGAAAATTCGTACTTCAAACAATAAAATTAGGAAAGCTACACAGAATAGCAATAAAAAATTGAGCACTCGGCGGCGCAAATGTGAAGAGGATCAGGAATCTGGAGGGCCTGATATGAACAGCTGCAGTAGCGCTAACTCATCAGAGGATGACAGCGCTTCACAAGATACTAATGGTGGTGGCGCTGTTTTAGAGGGCGAGGCATCGCCGCCAAAAGCCAAAACCAGAGCCACCAGAGGCTCTGCTACTGATCCACAAAGCCTTTATGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGACATCAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGGTATGGACTTCAATTTGTTCATTAAGTTGGGTTCTGAATGATTTGATTTCAAATGCATTGGTCATGATTTCGTTTTATTTGCAGCTTTTGAGCTCTGATGAGATGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCACCAGAAGCTTCCTTCTTTTTTGTGA | 1044 | 43.3 | MDSFAGLIGEGEWDLCSSILSMEELDFTPLIPPPTAEMPDWVCHLDSFTPNLPSCGNAIDQFPCIAAADHYMSMSNAAIEENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQIGNDHNATNSAKAFHHKRKSIVVADDDDHHHNKLNNPTKKIRTSNNKIRKATQNSNKKLSTRRRKCEEDQESGGPDMNSCSSANSSEDDSASQDTNGGGAVLEGEASPPKAKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKVWTSICSLSWVLNDLISNALVMISFYLQLLSSDEMWMYAPIAYNGMDIGLHQKLPSFL | 347 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1316589 | 1317950 | + | Carg21782-RA | Car09g00239 | 153976 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car09g00239 | 347 | MobiDBLite | consensus disorder prediction | 154 | 171 | - | - | |
| Car09g00239 | 347 | MobiDBLite | consensus disorder prediction | 190 | 213 | - | - | |
| Car09g00239 | 347 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 235 | 284 | IPR011598 | GO:0046983 | |
| Car09g00239 | 347 | MobiDBLite | consensus disorder prediction | 138 | 245 | - | - | |
| Car09g00239 | 347 | Pfam | Helix-loop-helix DNA-binding domain | 245 | 285 | IPR011598 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00125 | Car09g00239 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02217 | Car-Chr4:18009386 | Car09g00239 | Car-Chr9:1316589 | 7.43E-10 | dispersed | |
| Car09g00239 | Car-Chr9:1316589 | Car12g01123 | Car-Chr12:10941072 | 2.61E-21 | dispersed | |
| Car17g00527 | Car-Chr17:4897604 | Car09g00239 | Car-Chr9:1316589 | 1.35E-06 | dispersed | |
| Car17g00699 | Car-Chr17:6399517 | Car09g00239 | Car-Chr9:1316589 | 5.19E-17 | dispersed | |
| Car11g01142 | Car-Chr11:9163980 | Car09g00239 | Car-Chr9:1316589 | 4.23E-45 | wgd | |
| Car12g00539 | Car-Chr12:3584220 | Car09g00239 | Car-Chr9:1316589 | 1.68E-24 | wgd | |
| Car16g00289 | Car-Chr16:1789643 | Car09g00239 | Car-Chr9:1316589 | 1.32E-46 | wgd | |
| Car19g00413 | Car-Chr19:5990413 | Car09g00239 | Car-Chr9:1316589 | 1.71E-07 | wgd | |
| Car04g00421 | Car-Chr4:2404628 | Car09g00239 | Car-Chr9:1316589 | 3.13E-47 | wgd | |
| Car05g00125 | Car-Chr5:639016 | Car09g00239 | Car-Chr9:1316589 | 1.66E-61 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4047 | PF00010 | HLH | 1.10E-08 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car09g00239 | - | - | csv:101209196 | 298.901 |