Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00176 ATGGAAGGAGGTGATGACCTCCACCACCATCACCACCACCACCGTCCCACCTTCCCATTTCAATTGCTCGAGAAAAAAGACGACGACGCTGCATCTTGCTCCACTTCTCCTTACCCTTCTCTTGCAATCTCTCCCGACCCCACCACCGCCGCCGCCGCCGCCACCGTCTCCGTTGCAGAGCCTTCTTCCAAGAAGCCACCAGCCAAAAGAACCTCCACGAAAGACCGTCATACGAAAGTCGATGGTCGTGGTCGACGCATCCGAATGCCAGCCCTATGTGCAGCTAGGGTATTTCAACTCACACGAGAATTGGGTCATAAGTCCGACGGCGAAACCATCGAGTGGCTCCTTCAACAAGCGGAGCCTGCCGTGATTGCCGCTACCGGAACTGGTACCATCCCGGCTAACTTCACATCCCTCAATATCTCATTACGTAGCTCCGGCTCCACCATGTCTGTTCCTTCGCAGCTTCGGTCATCTTCCTATTACAACCCTAATTTCTCCCTGCATCAACCACGCCGAACGCTCTTCCCGGGATTCGGCCTCTCATCGGAACCCTCCTCCACCGCTCTCCTCAATTTCCAGTCCACCAACATCGGTAACTCTCTACTCCAAGCCAAACCTGAACTCAGAGACAACACTACCTCTTCATTAGACCTCTCGGACGCGGCGGAGGAAATCAGCATAGGGCGGAAGAGAAGACCGTCCACAGAGCAGGAGATGTCGTCGTCGTCGTCGTCGCAGCATCAAATGGGAGGGTATCTGCTACAGTCAAGTGCAGGGTCGATCCCAGCGAGCCACGGAGGAGGTCAGGTTCCGGCGAATTTTTGGATGCTTACAAATACAAATAACCAAGTGATGGGGGGTGATCCCATATGGACGTTTCCATCGGTTAACAACAGCGGGTTGTACAGAGGGACGATGTCTAGTGGGTTACATTTCATGAACTTCCCAGCCCCAGTCGCGTTAGTGCCAGGTCAGCAATTTGGTTCCGGCGCCGGCGGAGGGAATAATAGTTCCAGTGAGGGACACTTGAACATACTCGCTGGCCTGAATCCGTATCGCTCGGTTTCCACCACCGGCATCATGGAACAACAGGGAAGTGGATCGCACTCACATCACGGCGGCGGTGGAGATGATCGCCATGATTCAACCAGCCACCACTCATAA 1170 54.53 MEGGDDLHHHHHHHRPTFPFQLLEKKDDDAASCSTSPYPSLAISPDPTTAAAAATVSVAEPSSKKPPAKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSSYYNPNFSLHQPRRTLFPGFGLSSEPSSTALLNFQSTNIGNSLLQAKPELRDNTTSSLDLSDAAEEISIGRKRRPSTEQEMSSSSSSQHQMGGYLLQSSAGSIPASHGGGQVPANFWMLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGNNSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDSTSHHS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 839601 840770 - Carg10408-RA Car10g00176 155078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00176 389 MobiDBLite consensus disorder prediction 374 389 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 207 222 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 29 85 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 67 85 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 207 251 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 363 389 - -
Car10g00176 389 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Car10g00176 389 Pfam TCP family transcription factor 71 243 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00176 Car13g00957 CCT
Car10g00176 Car13g00957 ECH
Car10g00176 Car11g00147 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00176 Car-Chr10:839601 Car11g01298 Car-Chr11:10753075 5.58E-38 dispersed
Car17g01312 Car-Chr17:9868075 Car10g00176 Car-Chr10:839601 1.03E-37 dispersed
Car04g01863 Car-Chr4:10791537 Car10g00176 Car-Chr10:839601 4.32E-47 transposed
Car10g00176 Car-Chr10:839601 Car11g00147 Car-Chr11:831723 0 wgd
Car10g00176 Car-Chr10:839601 Car13g00957 Car-Chr13:9659431 7.41E-17 wgd
Car10g00176 Car-Chr10:839601 Car18g01068 Car-Chr18:10862749 7.07E-93 wgd
Car10g00176 Car-Chr10:839601 Car04g01690 Car-Chr4:9711586 4.24E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4141 PF03634 TCP 2.50E-39 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00176 - - csv:101221049 594.734