Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00292 ATGGAGACGTTTCTGCTGCGGATCCATTTTCGGAACGCCGCCGTGCTCGTCACCTACGCCACCGCCTTCCTCCTCCGCTTTCGGCCGTCTCTCGCCGACGATAACGACGACTGTAAGATAGGCACGTGTCCTTTTCTTTTACCTCCTCCGCCAGACAATAGCGACGACATCAAAAAGAAGATTATCATTGGCACATGCACTGGTTTTGGAGCCTTGCTTTTAACCTTACTTGTTCTTGGCATCTGCTACCGATGGCGCCAGCTCCGTCGTAAAAGGTCTCACATGCTGCCATACGTGCAACGGAGCGTTCTCTCGAATCCCCCGTCCGTGGAAGAAGCTGAGAATGGAGGTACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACGAACCATTTCGACTCCAACAAAGAGCTCGGCGATGGAGGCTTTGGCACAGTGCATTATGGCTTACTCAAAGACGGGCGTGCCGTTGCTGTCAAACGGTTGTTCGAAAGCAATTTCAAGAGAGTTGAGCAGTTCATGAATGAGGTCGGGATCCTCGCACGCTTACGCCACCACAACCTCGTTTCACTTTACGGTTGTACCTCGAGCAACAGCCGCGAGCTTCTGCTCGTGTATGAATACGTTCCGAACGGTACGGTGGCTGATCACCTCCATGGAAAACTAGCAAAGCCAAGCAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATCCTCCTCGACAACCACTACTCCGTTAAAGTAGCCGATTTCGGGTTATCCCGCCTCTTCCCACTCGACGTCACGCACGTTTCAACCGCTCCACAAGGTACTCCCGGCTACGTCGACCCGGAGTACCATCAGTGCTACCAACTCTCTGATAAAAGCGATGTCTTCAGCTTCGGCGTAGTACTTGTTGAACTCATGTCCTCAATGCCTGCTGTTGACATCACAAGACATAGACAAGAGATCAACCTGTTCAACATGGCCATCAACAAGATCCAAAGCCACGCATTACACGAACTCGTCGACCCATCGCTCGGTTTCGAATCAGACGACAAAATCAAAGACATGATAACGAGCGTCGCCGAGGTTGCATTTCAATGCCTGCAGAGCATGAAAGACGAGAGGCCAACAATGATGGAAGTTCTCGACAGTCTAAACGCCATACAGAATCGAAACGGTGATGCTGTGCAGCTTAGGAGCAAACAAGAGGAGCCTATTCAAGGAATTGGGCATGAATTTCCTGGCAAACAAATGGCATACATTGGTGTCAGCTCCATTGTACCGGCAGTGGCTGCCAGTCCTCAGTCTTTGGAGCAAGCCAACGTTGACATCCATTCTGTTGAACTTGGTGGGGTGGGCGCCGCCTTTGGACCAGTCGACCCAAGTCAAGGTCCGGTTGGAATTGGTGGTGGAGAAGTGGATTCCGACGAGGGTGGGGAGGTAGTGCTCGTCCATGTAACAAGAGGGCTTGCAGTGTTGCCGGAAGACGGGGAAGTATTTCTGGTCGGAGACAACTTGGGAGGCGAGGGGTCGGTCAATTTGGAACCACTGGGAGCCCTTGCGCCATTGGTGGAGGTTGATTGTGGGGCGCATTTGGGGTTTGTAGCGGCCCCGACCCACTGGTCCTGGGAGGTCGTAGGACTCGACGAAGGTGGTCTTGGAGGCCATTAA 1743 51.92 METFLLRIHFRNAAVLVTYATAFLLRFRPSLADDNDDCKIGTCPFLLPPPPDNSDDIKKKIIIGTCTGFGALLLTLLVLGICYRWRQLRRKRSHMLPYVQRSVLSNPPSVEEAENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVHYGLLKDGRAVAVKRLFESNFKRVEQFMNEVGILARLRHHNLVSLYGCTSSNSRELLLVYEYVPNGTVADHLHGKLAKPSKLPWSTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNHYSVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELMSSMPAVDITRHRQEINLFNMAINKIQSHALHELVDPSLGFESDDKIKDMITSVAEVAFQCLQSMKDERPTMMEVLDSLNAIQNRNGDAVQLRSKQEEPIQGIGHEFPGKQMAYIGVSSIVPAVAASPQSLEQANVDIHSVELGGVGAAFGPVDPSQGPVGIGGGEVDSDEGGEVVLVHVTRGLAVLPEDGEVFLVGDNLGGEGSVNLEPLGALAPLVEVDCGAHLGFVAAPTHWSWEVVGLDEGGLGGH 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1407109 1410759 - Carg15159-RA Car10g00292 155194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00292 580 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Car10g00292 580 ProSiteProfiles Protein kinase domain profile. 137 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00292 580 Pfam Protein kinase domain 138 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00292 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00292 Car13g00846 CCT
Car10g00292 Car13g00846 ECH
Car10g00292 Car11g00260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00292 Car-Chr10:1407109 Car15g00057 Car-Chr15:398012 7.61E-140 dispersed
Car01g00373 Car-Chr1:2094119 Car10g00292 Car-Chr10:1407109 5.75E-10 transposed
Car10g00292 Car-Chr10:1407109 Car11g00260 Car-Chr11:1441603 0 wgd
Car10g00292 Car-Chr10:1407109 Car13g00848 Car-Chr13:9088495 7.47E-23 wgd
Car10g00292 Car-Chr10:1407109 Car18g00924 Car-Chr18:9992602 2.87E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89119 PF00069 Pkinase 1.20E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00292 - - csv:101210087 640.573