Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00260 ATGGCTTCCAAGCTCCAAATCCTCTTCAAACCCACTCTGTTTTTCTTCTTAACATTCATCTTCTCGACCTCAGCTGTGCCGGATCATAAGCTCAACCCCTGTCCGCCTAAAAGCTGTGGATATGGTCCAAAAATAAGTTACCCCTTTTGGATAGATGGCGTGCACGAACCTTCCTGCGGAGACCCAGATTTCAAAATCAAATGCAATGAATATCAGTACCCAGTTCTTGAAATTTCCGATGAAGATTTTATCATCCAAAACATTTTCCCCCAAAACCATTCGTTTCTTTTGGCCAGTGCTGCAGCTTACGAGCAACCTTCATGCCCCTCGCATAATATTAGCCTCCATGGAAAACCCTTTTATTTCACTTCGGATACTGAAGATTTTTTCTTCTTTTATGATTGCCCATCAAAGCCTGGGGGTTACATCTTTGAACTGAATTGTAATTCCGATGAAACCCACTTCTCTTTTGCGATTTTCCACAAGGGTCTTGTGGAGTTGGAGAAATCTCGCTTGCAGTCTTGCCAGTCTATGATTCTTGTTCCTATCCGCAAGAACTCGATGGCTAGAGATGATTTGGGGAAATTGGGTTACGTTGACATTTTGAAAATGGGTTTTGTTCTGAATTGGAACTGCAACGATTGTAAGCGAAGTGGAAATGGCAACGCAAGGAAAAACAACATTATCATTGGTACGTGCATTGGCTTTGGAGCCTTGCTTTTGTGTATAATTGTTCTATGCATCTGCTACCGACGACGCCAGCTCCGTCGTAAACGTTCTCACGCCGTACCGTATGCACAACGGAGCATTCCCTTGAATCCGTCAAATCCCCATTCTGTGGAAGAGCTTGAGAAGGGAGATTCATACTTAGGCGTTCATCTTTTCTCTTATAAAGAACTTGAAGAAGCCACCAACCATTTTGACTCCAATAAAGAGCTTGGAGATGGAGGCTTTGGCACGGTTTATTATGGCTTACTCAAAGATGGGCGTGCCGTTGCTGTCAAAAGGTTGTTTGAAAGCAATTTCAGGAGAGTTGAGCAGTTCATGAATGAGGTGGAGATCCTAGCCCGCCTGCGCCATCGTAACCTCGTTTCGCTTTACGGTTGCACCTCACGGAACAGCCGTGAGCTTCTGCTTGTGTATGAATACGTCTCGAATGGCACGGTGGCCGATAATCTCCATGGAAAGCTAGCAAAGCCTGGAAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTTGACAACAACTTTTGTGTTAAAGTAGCCGATTTCGGTTTGTCCCGTCTCTTCCCGCTCGATGTCACGCATGTCTCAACCGCTCCACAAGGCACTCCTGGCTATGTCGATCCGGAGTACCATCAGTGTTACCAACTCTCTGATAAAAGCGATGTCTTTAGCTTCGGTGTGGTACTAGTTGAACTCATATCCTCAATGCCTGCTGTTGACATCACAAGGCACAGACAAGAGATCAATCTATTCAACATGGCTATCAAAAAAATCCAAAGCCACGCATTGAATGAACTCGTCGACCCTTCACTCGGTTTCGAAACGGACTACAAGATCCAAAACATGATCACCGGAGTAGCCGAGTTGGCCTTTCGATGCCTACAGAGCATGAAAGATGAGAGGCCAACAATGATGGAAGTTCTTGACACTCTGAACATCATACAGAAACAGAACGCCGAGAAAGGGAATGATCGCGATACCGACATTTCTGCTAAGGACGACGCCGTGCTACTGAAGAATGGCTATGGTTCTTCTCCAAGCTCCCTGTCTGTATCTTGGGTTAGCAGTAACACCTCCACAGCAACGAATGAAACCGTCAGTGCCTAA 1911 45.26 MASKLQILFKPTLFFFLTFIFSTSAVPDHKLNPCPPKSCGYGPKISYPFWIDGVHEPSCGDPDFKIKCNEYQYPVLEISDEDFIIQNIFPQNHSFLLASAAAYEQPSCPSHNISLHGKPFYFTSDTEDFFFFYDCPSKPGGYIFELNCNSDETHFSFAIFHKGLVELEKSRLQSCQSMILVPIRKNSMARDDLGKLGYVDILKMGFVLNWNCNDCKRSGNGNARKNNIIIGTCIGFGALLLCIIVLCICYRRRQLRRKRSHAVPYAQRSIPLNPSNPHSVEELEKGDSYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLFESNFRRVEQFMNEVEILARLRHRNLVSLYGCTSRNSRELLLVYEYVSNGTVADNLHGKLAKPGKLPWSTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAIKKIQSHALNELVDPSLGFETDYKIQNMITGVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNAEKGNDRDTDISAKDDAVLLKNGYGSSPSSLSVSWVSSNTSTATNETVSA 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1441603 1443801 - Carg09129-RA Car11g00260 156213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00260 636 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Car11g00260 636 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Car11g00260 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Car11g00260 636 ProSiteProfiles Protein kinase domain profile. 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g00260 636 MobiDBLite consensus disorder prediction 609 636 - -
Car11g00260 636 Pfam Protein kinase domain 308 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00260 Car13g00846 CCT
Car11g00260 Car13g00846 ECH
Car10g00292 Car11g00260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00260 Car-Chr11:1441603 Car18g00924 Car-Chr18:9992602 1.35E-156 dispersed
Car13g00848 Car-Chr13:9088495 Car11g00260 Car-Chr11:1441603 1.35E-21 dispersed
Car01g00373 Car-Chr1:2094119 Car11g00260 Car-Chr11:1441603 5.49E-12 transposed
Car08g00988 Car-Chr8:6684453 Car11g00260 Car-Chr11:1441603 2.92E-165 transposed
Car15g00057 Car-Chr15:398012 Car11g00260 Car-Chr11:1441603 3.96E-163 transposed
Car10g00292 Car-Chr10:1407109 Car11g00260 Car-Chr11:1441603 0 wgd
Car11g00260 Car-Chr11:1441603 Car13g00846 Car-Chr13:9077538 7.78E-49 wgd
Car11g00260 Car-Chr11:1441603 Car18g00923 Car-Chr18:9990259 3.08E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89161 PF00069 Pkinase 1.60E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00260 - - cmo:103494139 920.613