Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00349 | ATGGCTGCTCTTTTGAAAGCTCTGTTTCTTTTCGTCTTCGTCTTCTTCAGCTTGTCGGAAGCCAGAGAGATCTTGGTCGGAGGCAAAACCAACGCCTGGAAAATCCCTTCTTCTCCAGCTCAATCTCTCAATCAATGGGCCGAAAGCTCCCGGTTTCGTGTCGGCGACACTCTCGTGTTGAAAGTGAGGAAGGAAGATTACGAAGCTTGCAACATTACGAACCCACAAGAGAAACTGGAGGACGGGAGCGCCAAGGTGGAGCTTCACAACCCGGGTCCGATCTACTTCATCAGTGGAGTAAAGGGTCACTGCGAGCAGGGTCTTAAGCTTGTCGTGGTCGTTATGACTCCTCGTCACAGGTTCATTGGCATCTCTCCGGCGCCTTCTCCGGCGGAGATTGAGGCTCCGGCGGTTGCTCCCTCGAGTGGGGCTGCAAGTTTGAAGGCCAACAAGCATACCATCCTTCTTATGCAAACATCTCACAACAGATCAACTAGGACTTTTATGGATTATGATTCAATAAGTCAATCTATGGACGGTATATGTGGCCTATACGAAAGGAAACTTAAGGACTTAAATCCGGCCATCAGAAATATCACTTATGACATTGCAGATCTCTACAATTTTATCGATGGTCTCACTGATATGAGCGCACTAGTGTATGCTGCCTTCACTTTATCACTCTTTTCCCCTTCCCCACTACTCAAGAATAAAAATCGAACTTTTCGGGCTGTTGGAAGAACAACAGTTTTGCCCACAATCTTCAAAATATTCGAGCATTCAATTCAGGGATATTTGCCTTATGATCGGCAGTGGATTAAACAAAAGATCTTTCAACATCTGAAGAAACTAGCACATTGA | 861 | 46.11 | MAALLKALFLFVFVFFSLSEAREILVGGKTNAWKIPSSPAQSLNQWAESSRFRVGDTLVLKVRKEDYEACNITNPQEKLEDGSAKVELHNPGPIYFISGVKGHCEQGLKLVVVVMTPRHRFIGISPAPSPAEIEAPAVAPSSGAASLKANKHTILLMQTSHNRSTRTFMDYDSISQSMDGICGLYERKLKDLNPAIRNITYDIADLYNFIDGLTDMSALVYAAFTLSLFSPSPLLKNKNRTFRAVGRTTVLPTIFKIFEHSIQGYLPYDRQWIKQKIFQHLKKLAH | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2220059 | 2225156 | + | Carg03956-RA | Car12g00349 | 157965 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00349 | 286 | Pfam | Plastocyanin-like domain | 33 | 107 | IPR003245 | GO:0009055 | |
| Car12g00349 | 286 | Pfam | Enhancer of rudimentary | 257 | 284 | IPR000781 | - | |
| Car12g00349 | 286 | Pfam | Enhancer of rudimentary | 151 | 225 | IPR000781 | - | |
| Car12g00349 | 286 | ProSiteProfiles | Phytocyanin domain profile. | 22 | 116 | IPR003245 | GO:0009055 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00293 | Car12g00349 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car12g00349 | Car-Chr12:2220059 | Car09g00771 | Car-Chr9:4545278 | 1.24E-24 | dispersed | |
| Car02g00081 | Car-Chr2:536777 | Car12g00349 | Car-Chr12:2220059 | 3.92E-13 | transposed | |
| Car04g00882 | Car-Chr4:5077060 | Car12g00349 | Car-Chr12:2220059 | 2.79E-25 | transposed | |
| Car05g00293 | Car-Chr5:1619451 | Car12g00349 | Car-Chr12:2220059 | 6.96E-70 | transposed | |
| Car16g00852 | Car-Chr16:6228714 | Car12g00349 | Car-Chr12:2220059 | 4.56E-22 | transposed | |
| Car12g00349 | Car-Chr12:2220059 | Car05g00291 | Car-Chr5:1611712 | 1.71E-59 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00349 | - | - | csv:101210664 | 195.282 |