Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00390 ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCTTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCGACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGTGACGGTCGTCTTGCTCTCGACGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATATTAATGACTCTGAGGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGAATCTTGATGGTCCTAATTTATCTACAAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACGGCGGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGAGGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAATCATCCCTTCAAACTTTTTACTCATATCAACGACACATTTTGCTTCTTTCGTTCAATATTTGTCCCTCCTGGATTATCAGGAATCTTTTTATGACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGACCGATTGATTTGACTGAAAAACAAGAGCTGGAAGAAAGCACTTTCCACCAAGAGAAAGTGTGCTCTGAACGACAGAAGAATCATAAGATATCTACCAACGATACTTATTGTTCTTCTTCTTTCCAAGAGTTTCAGGGAATGCAGAGAATTTTACCTTTATATAATAATATGGACGATGATTATTGGTTTGAATCAAATTCTCAAGTGAGCATAACGCATTTATGGGGTGAAGAACACAACTTTTAA 1317 40.93 MLNAVEDLLLRHGHSDFRSHLLPSHSHHRGDMSLSSSSASSSLARPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDINDSEALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDENLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHEAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKSSLQTFYSYQRHILLLSFNICPSWIIRNLFMTEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLTEKQELEESTFHQEKVCSERQKNHKISTNDTYCSSSFQEFQGMQRILPLYNNMDDDYWFESNSQVSITHLWGEEHNF 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2480051 2483825 + Carg03998-RA Car12g00390 158006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00390 438 Pfam E2F transcription factor CC-MB domain 239 361 IPR032198 GO:0046983
Car12g00390 438 PANTHER TRANSCRIPTION FACTOR E2F 301 435 IPR015633 GO:0000978|GO:0006357
Car12g00390 438 PANTHER TRANSCRIPTION FACTOR E2F 22 275 IPR015633 GO:0000978|GO:0006357
Car12g00390 438 MobiDBLite consensus disorder prediction 107 125 - -
Car12g00390 438 SMART E2F_TDP_2 157 222 IPR003316 GO:0005667|GO:0006355
Car12g00390 438 Pfam E2F/DP family winged-helix DNA-binding domain 159 222 IPR003316 GO:0005667|GO:0006355
Car12g00390 438 Gene3D - 152 224 IPR036388 -
Car12g00390 438 PANTHER TRANSCRIPTION FACTOR E2FC 22 275 - -
Car12g00390 438 PANTHER TRANSCRIPTION FACTOR E2FC 301 435 - -
Car12g00390 438 Gene3D - 228 366 - -
Car12g00390 438 CDD E2F_DD 233 360 IPR032198 GO:0046983
Car12g00390 438 SUPERFAMILY E2F-DP heterodimerization region 234 362 IPR037241 -
Car12g00390 438 Coils Coil 228 272 - -
Car12g00390 438 MobiDBLite consensus disorder prediction 21 42 - -
Car12g00390 438 SUPERFAMILY Winged helix DNA-binding domain 157 220 IPR036390 -
Car12g00390 438 MobiDBLite consensus disorder prediction 101 154 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00249 Car12g00390 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00390 Car-Chr12:2480051 Car20g00133 Car-Chr20:743144 5.39E-45 dispersed
Car12g00390 Car-Chr12:2480051 Car05g00249 Car-Chr5:1391206 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4399 PF16421 E2F_CC-MB 2.60E-20 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00390 K06620 - csv:101211469 604.364