Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00580 ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACTTGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAG 987 48.02 MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSEVRLQILVPLRLLCPFVVGTNA 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3870510 3874029 - Carg23968-RA Car12g00580 158196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00580 328 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Car12g00580 328 Coils Coil 287 307 - -
Car12g00580 328 Pfam KH domain 237 303 IPR004088 GO:0003723
Car12g00580 328 Pfam KH domain 145 210 IPR004088 GO:0003723
Car12g00580 328 MobiDBLite consensus disorder prediction 87 109 - -
Car12g00580 328 MobiDBLite consensus disorder prediction 1 61 - -
Car12g00580 328 MobiDBLite consensus disorder prediction 44 58 - -
Car12g00580 328 ProSiteProfiles Type-1 KH domain profile. 233 301 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00374 Car12g00580 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01079 Car-Chr11:8406362 Car12g00580 Car-Chr12:3870510 4.50E-85 dispersed
Car12g00580 Car-Chr12:3870510 Car19g00476 Car-Chr19:6404803 3.04E-51 dispersed
Car12g00580 Car-Chr12:3870510 Car05g00088 Car-Chr5:446645 3.01E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00580 K13210 - csv:101216803 525.783