Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00846 ATGAAAACTTCCGTCCCTCTCTTCTTCTTCTTTTTCTTCTTCACAGTGGTGTGGTTTGATCTTCCGCTATGTTCCGCCGACGACGCCCACGAGGAATTCAAAGCTTGCAGTCTCTATTACAACTGCGGAGATTTGGTAAACGTCACGTATCCATTTTGGGGGAATGAGCGGCAGGAATTCTGCGGCCGCCGTGAATTCAAGCTCAATTGCAAACACAACAAAACCACTACGATCGAAATCAGTTCTATTGAGTTTCACGTTCTCAACATCAGCCGATCCAAACATACAATGACAATTGCAAGATCGGATCTCCGAACTGATTACTGCCCTAAAATCGAAACCAAAACGACGGCGATTGATTATCGTCTCTTCAAGTATACTTTGAACGATCTGAATCTCTCTGTCTGGTACGATTGCCCGCTGCTACCTGAAATTCTCGACAATTACAGATTCACGTGCGGATCGGAGGGGGAAATACGAGGGAGAGCGAATTACGCTTTCGAAACGGAAGCGCTGAATCGGAGTAGAAACATGAGCGAGTGTAGACTGAACATCGAAGTGACAATTACAAAAGAGGTATTCAAAGAAACACACGAGAACAGAACGATGGCGGTGGAGCAGGGTGTGAAAAGAGGGTTTGATGTGGAATACGGGGACTTCTACACGGTGGCGTGCGAGGGGTGCAAGGTATACGGCGGCAAGTGTGGAGCAAACGCCACCCATGAGTTTTACTGCATTTGTGGAGATGGAGATATCCATCCTTACGTTTGCAAGCCTCCTCCTCCTCCTCCTCCTCCTCCTGGTACGTACTTTATCTTCCATTGCATCAAATCTCCTAGAACCCCTTTTCTTTTTATCATCTTCTTCATCATCTTAACTCCCCAAACTCTGTCCTCAGACGAGAAGTTTGAAGCTTGTGCTCCAAAATCCTGTGGGAAAGGTCCGAATATCAGCTACCCTTTCCGGGTAGCTCATTCGCACAGCCCCTTCTGTGGACTCCCTACCTTTGATATCACCTGCAGACATGAATACCCAGTTATCAAAATTTCAGAAGAGGATTATATCATCAGAGAAATCTCCTATCAAACCCACTCTTTTCTTGTGGCAAATGCTGCGGTTTACGACCTCCAATGCCCTACTCCTCTTCATAACTTCACCCTCCACCGAACCCCATTCACTTACACTCCGGATCATATTGGCTTCTTCTTCTTTTACAACTGCACTTCTCTTCCTCCCAAGTTTAGCTACCCAATTCATTGTTCAAACACAACCAAACTCCATTCTTTTGCCGCTTTCCACGATGGATTTGTGGAGCTTATGAATTTCTCTGTCGATTCTTGTCAATCCTCGGTAGAGGTGCCTATAGACATTACTAATCAGGACGATGATTTCTCTGGGTTGTTGAGGAAGAGTTATTCCGATGTCTTGAAGATGGGTTTCACTCTAAATTGGAGTGCCCAAAATTGTAGCAATTGTGAGACAAGTGGTGGGCGATGTGGGTTTGAAAGCAACGAGTTTGTTTGCTTTTGTCCTGATGGACCTCATCCACAAACCTGCAAACAGGGTAACTTTCTAGGAAATAAATCTTGCTCTGGCTCTTGCTCGAATCTTAGCTCTGTTCTTCTATTTCTTTTGATAAACAATCTTTCCTAA 1653 45.01 MKTSVPLFFFFFFFTVVWFDLPLCSADDAHEEFKACSLYYNCGDLVNVTYPFWGNERQEFCGRREFKLNCKHNKTTTIEISSIEFHVLNISRSKHTMTIARSDLRTDYCPKIETKTTAIDYRLFKYTLNDLNLSVWYDCPLLPEILDNYRFTCGSEGEIRGRANYAFETEALNRSRNMSECRLNIEVTITKEVFKETHENRTMAVEQGVKRGFDVEYGDFYTVACEGCKVYGGKCGANATHEFYCICGDGDIHPYVCKPPPPPPPPPGTYFIFHCIKSPRTPFLFIIFFIILTPQTLSSDEKFEACAPKSCGKGPNISYPFRVAHSHSPFCGLPTFDITCRHEYPVIKISEEDYIIREISYQTHSFLVANAAVYDLQCPTPLHNFTLHRTPFTYTPDHIGFFFFYNCTSLPPKFSYPIHCSNTTKLHSFAAFHDGFVELMNFSVDSCQSSVEVPIDITNQDDDFSGLLRKSYSDVLKMGFTLNWSAQNCSNCETSGGRCGFESNEFVCFCPDGPHPQTCKQGNFLGNKSCSGSCSNLSSVLLFLLINNLS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9077538 9080755 + Carg04826-RA Car13g00846 159763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00846 550 Pfam Wall-associated receptor kinase C-terminal 153 250 IPR032872 -
Car13g00846 550 Pfam Wall-associated receptor kinase C-terminal 440 513 IPR032872 -
Car13g00846 550 Pfam Wall-associated receptor kinase galacturonan-binding 306 369 IPR025287 GO:0030247
Car13g00846 550 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00292 Car13g00846 CCT
Car11g00260 Car13g00846 CCT
Car10g00292 Car13g00846 ECH
Car11g00260 Car13g00846 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00846 Car-Chr13:9077538 Car15g00057 Car-Chr15:398012 9.97E-24 dispersed
Car13g00846 Car-Chr13:9077538 Car13g00847 Car-Chr13:9080769 1.63E-58 tandem
Car11g00260 Car-Chr11:1441603 Car13g00846 Car-Chr13:9077538 7.78E-49 wgd
Car13g00846 Car-Chr13:9077538 Car18g00923 Car-Chr18:9990259 2.84E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00846 - - cmos:111431361 539.265